| Revision: | 24 |
| Committed: | Tue Jul 26 21:46:39 2011 UTC (13 years, 1 month ago) by gpertea | File size: | 340 byte(s) |
| Log Message: |
| Line | User | Rev | File contents |
|---|---|---|---|
| 1 | gpertea | 23 | #!/bin/tcsh -f |
| 2 | |||
| 3 | set prog = 'gmap' | ||
| 4 | if ( $0 =~ *pmap2seq ) then | ||
| 5 | set prog = 'pmap' | ||
| 6 | endif | ||
| 7 | |||
| 8 | if ($2'x' == 'x') then | ||
| 9 | echo "Usage: \n $0 qryseq(s).fasta genomicseq.fasta" | ||
| 10 | exit 1 | ||
| 11 | endif | ||
| 12 | |||
| 13 | set fqry=$1 | ||
| 14 | shift | ||
| 15 | set fgenomic=$1 | ||
| 16 | shift | ||
| 17 | if (-f $fqry && -f $fgenomic) then | ||
| 18 | $prog -g $fgenomic -f2 $* $fqry | ||
| 19 | else | ||
| 20 | echo "$fqry or $fgenomic not found!" | ||
| 21 | endif |
| Name | Value |
|---|---|
| svn:executable | * |