Revision: | 24 |
Committed: | Tue Jul 26 21:46:39 2011 UTC (13 years, 1 month ago) by gpertea | File size: | 340 byte(s) |
Log Message: |
Line | User | Rev | File contents |
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1 | gpertea | 23 | #!/bin/tcsh -f |
2 | |||
3 | set prog = 'gmap' | ||
4 | if ( $0 =~ *pmap2seq ) then | ||
5 | set prog = 'pmap' | ||
6 | endif | ||
7 | |||
8 | if ($2'x' == 'x') then | ||
9 | echo "Usage: \n $0 qryseq(s).fasta genomicseq.fasta" | ||
10 | exit 1 | ||
11 | endif | ||
12 | |||
13 | set fqry=$1 | ||
14 | shift | ||
15 | set fgenomic=$1 | ||
16 | shift | ||
17 | if (-f $fqry && -f $fgenomic) then | ||
18 | $prog -g $fgenomic -f2 $* $fqry | ||
19 | else | ||
20 | echo "$fqry or $fgenomic not found!" | ||
21 | endif |
Name | Value |
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svn:executable | * |