 ../
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SeqAn-1.2/
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30
(13 years ago)
by gpertea:
added SeqAn to tophat source pack
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GArgs.cpp
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29
(13 years ago)
by gpertea:
adding tophat source work
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GArgs.h
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29
(13 years ago)
by gpertea:
adding tophat source work
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GBase.cpp
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135
(12 years ago)
by gpertea:
wip - SplicedSAMHitFactory() still not implemented
|
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GBase.h
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135
(12 years ago)
by gpertea:
wip - SplicedSAMHitFactory() still not implemented
|
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GFaSeqGet.cpp
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29
(13 years ago)
by gpertea:
adding tophat source work
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GFaSeqGet.h
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29
(13 years ago)
by gpertea:
adding tophat source work
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GFastaIndex.cpp
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29
(13 years ago)
by gpertea:
adding tophat source work
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GFastaIndex.h
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29
(13 years ago)
by gpertea:
adding tophat source work
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GHash.hh
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29
(13 years ago)
by gpertea:
adding tophat source work
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GList.hh
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135
(12 years ago)
by gpertea:
wip - SplicedSAMHitFactory() still not implemented
|
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GStr.cpp
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135
(12 years ago)
by gpertea:
wip - SplicedSAMHitFactory() still not implemented
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GStr.h
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135
(12 years ago)
by gpertea:
wip - SplicedSAMHitFactory() still not implemented
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Makefile
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135
(12 years ago)
by gpertea:
wip - SplicedSAMHitFactory() still not implemented
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align_status.cpp
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135
(12 years ago)
by gpertea:
wip - SplicedSAMHitFactory() still not implemented
|
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align_status.h
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135
(12 years ago)
by gpertea:
wip - SplicedSAMHitFactory() still not implemented
|
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alphabet.h
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29
(13 years ago)
by gpertea:
adding tophat source work
|
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assert_helpers.h
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29
(13 years ago)
by gpertea:
adding tophat source work
|
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bam2fastx.cpp
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135
(12 years ago)
by gpertea:
wip - SplicedSAMHitFactory() still not implemented
|
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bam_dump.cpp
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29
(13 years ago)
by gpertea:
adding tophat source work
|
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bam_merge.cpp
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29
(13 years ago)
by gpertea:
adding tophat source work
|
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bed_to_juncs.py
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29
(13 years ago)
by gpertea:
adding tophat source work
|
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bwt2sam.cpp
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29
(13 years ago)
by gpertea:
adding tophat source work
|
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bwt_map.cpp
|
137
(12 years ago)
by gpertea:
wip spliceCigar() in bwt_map.cpp needs testing
|
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bwt_map.h
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137
(12 years ago)
by gpertea:
wip spliceCigar() in bwt_map.cpp needs testing
|
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closures.cpp
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135
(12 years ago)
by gpertea:
wip - SplicedSAMHitFactory() still not implemented
|
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closures.h
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
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codons.cpp
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29
(13 years ago)
by gpertea:
adding tophat source work
|
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codons.h
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29
(13 years ago)
by gpertea:
adding tophat source work
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common.cpp
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135
(12 years ago)
by gpertea:
wip - SplicedSAMHitFactory() still not implemented
|
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common.h
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135
(12 years ago)
by gpertea:
wip - SplicedSAMHitFactory() still not implemented
|
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config.h
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29
(13 years ago)
by gpertea:
adding tophat source work
|
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contig_to_chr_coords.py
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29
(13 years ago)
by gpertea:
adding tophat source work
|
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deletions.cpp
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29
(13 years ago)
by gpertea:
adding tophat source work
|
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deletions.h
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29
(13 years ago)
by gpertea:
adding tophat source work
|
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extract_reads.cpp
|
135
(12 years ago)
by gpertea:
wip - SplicedSAMHitFactory() still not implemented
|
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fix_map_ordering.cpp
|
34
(13 years ago)
by gpertea:
wip segment_juncs
|
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fragments.cpp
|
135
(12 years ago)
by gpertea:
wip - SplicedSAMHitFactory() still not implemented
|
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fragments.h
|
135
(12 years ago)
by gpertea:
wip - SplicedSAMHitFactory() still not implemented
|
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gdna.cpp
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
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gdna.h
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
|
gff.cpp
|
135
(12 years ago)
by gpertea:
wip - SplicedSAMHitFactory() still not implemented
|
|
gff.h
|
135
(12 years ago)
by gpertea:
wip - SplicedSAMHitFactory() still not implemented
|
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gtf_juncs.cpp
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
|
insertions.cpp
|
135
(12 years ago)
by gpertea:
wip - SplicedSAMHitFactory() still not implemented
|
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insertions.h
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
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inserts.cpp
|
135
(12 years ago)
by gpertea:
wip - SplicedSAMHitFactory() still not implemented
|
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inserts.h
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
|
juncs_db.cpp
|
135
(12 years ago)
by gpertea:
wip - SplicedSAMHitFactory() still not implemented
|
|
junctions.cpp
|
135
(12 years ago)
by gpertea:
wip - SplicedSAMHitFactory() still not implemented
|
|
junctions.h
|
135
(12 years ago)
by gpertea:
wip - SplicedSAMHitFactory() still not implemented
|
|
library_stats.cpp
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
|
long_spanning_reads.cpp
|
135
(12 years ago)
by gpertea:
wip - SplicedSAMHitFactory() still not implemented
|
|
mask_sam.cpp
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
|
prep_reads.cpp
|
135
(12 years ago)
by gpertea:
wip - SplicedSAMHitFactory() still not implemented
|
|
qual.cpp
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
|
qual.h
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
|
reads.cpp
|
135
(12 years ago)
by gpertea:
wip - SplicedSAMHitFactory() still not implemented
|
|
reads.h
|
135
(12 years ago)
by gpertea:
wip - SplicedSAMHitFactory() still not implemented
|
|
sam2bam.cpp
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
|
sam_juncs.cpp
|
135
(12 years ago)
by gpertea:
wip - SplicedSAMHitFactory() still not implemented
|
|
segment_juncs.cpp
|
135
(12 years ago)
by gpertea:
wip - SplicedSAMHitFactory() still not implemented
|
|
segments.h
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
|
sra_to_solid.py
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
|
timer.h
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
|
tokenize.cpp
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
|
tokenize.h
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
|
tophat
|
137
(12 years ago)
by gpertea:
wip spliceCigar() in bwt_map.cpp needs testing
|
|
tophat.py
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
|
tophat_reports.cpp
|
135
(12 years ago)
by gpertea:
wip - SplicedSAMHitFactory() still not implemented
|
|
wiggles.cpp
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
|
wiggles.h
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
