 ../
|
FastaTools.cpp
|
165
(12 years ago)
by gpertea:
sync back with Daehwan. Test bam_merge for memory leaks!
|
|
FastaTools.h
|
165
(12 years ago)
by gpertea:
sync back with Daehwan. Test bam_merge for memory leaks!
|
|
GArgs.cpp
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
|
GArgs.h
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
|
GBase.cpp
|
154
(12 years ago)
by gpertea:
massive update with Daehwan's work
|
|
GBase.h
|
154
(12 years ago)
by gpertea:
massive update with Daehwan's work
|
|
GFaSeqGet.cpp
|
154
(12 years ago)
by gpertea:
massive update with Daehwan's work
|
|
GFaSeqGet.h
|
154
(12 years ago)
by gpertea:
massive update with Daehwan's work
|
|
GFastaIndex.cpp
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
|
GFastaIndex.h
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
|
GHash.hh
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
|
GList.hh
|
154
(12 years ago)
by gpertea:
massive update with Daehwan's work
|
|
GStr.cpp
|
135
(12 years ago)
by gpertea:
wip - SplicedSAMHitFactory() still not implemented
|
|
GStr.h
|
154
(12 years ago)
by gpertea:
massive update with Daehwan's work
|
|
GTFToFasta.cpp
|
165
(12 years ago)
by gpertea:
sync back with Daehwan. Test bam_merge for memory leaks!
|
|
GTFToFasta.h
|
165
(12 years ago)
by gpertea:
sync back with Daehwan. Test bam_merge for memory leaks!
|
|
Makefile
|
207
(12 years ago)
by gpertea:
wip
|
|
align_status.cpp
|
200
(12 years ago)
by gpertea:
|
|
align_status.h
|
200
(12 years ago)
by gpertea:
|
|
alphabet.h
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
|
assert_helpers.h
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
|
bam2fastx.cpp
|
205
(12 years ago)
by gpertea:
silly bug fix
|
|
bam_dump.cpp
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
|
bam_merge.cpp
|
200
(12 years ago)
by gpertea:
|
|
bed_to_juncs.py
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
|
bwt2sam.cpp
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
|
bwt_map.cpp
|
206
(12 years ago)
by gpertea:
updated
|
|
bwt_map.h
|
200
(12 years ago)
by gpertea:
|
|
closures.cpp
|
154
(12 years ago)
by gpertea:
massive update with Daehwan's work
|
|
closures.h
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
|
codons.cpp
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
|
codons.h
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
|
common.cpp
|
207
(12 years ago)
by gpertea:
wip
|
|
common.h
|
207
(12 years ago)
by gpertea:
wip
|
|
config.h
|
200
(12 years ago)
by gpertea:
|
|
contig_to_chr_coords.py
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
|
deletions.cpp
|
154
(12 years ago)
by gpertea:
massive update with Daehwan's work
|
|
deletions.h
|
200
(12 years ago)
by gpertea:
|
|
extract_reads.cpp
|
135
(12 years ago)
by gpertea:
wip - SplicedSAMHitFactory() still not implemented
|
|
fix_map_ordering.cpp
|
167
(12 years ago)
by gpertea:
bam_merge needs fixing!
|
|
fragments.cpp
|
200
(12 years ago)
by gpertea:
|
|
fragments.h
|
200
(12 years ago)
by gpertea:
|
|
fusions.cpp
|
200
(12 years ago)
by gpertea:
|
|
fusions.h
|
200
(12 years ago)
by gpertea:
|
|
gdna.cpp
|
154
(12 years ago)
by gpertea:
massive update with Daehwan's work
|
|
gdna.h
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
|
gff.cpp
|
154
(12 years ago)
by gpertea:
massive update with Daehwan's work
|
|
gff.h
|
154
(12 years ago)
by gpertea:
massive update with Daehwan's work
|
|
gtf_juncs.cpp
|
154
(12 years ago)
by gpertea:
massive update with Daehwan's work
|
|
insertions.cpp
|
154
(12 years ago)
by gpertea:
massive update with Daehwan's work
|
|
insertions.h
|
200
(12 years ago)
by gpertea:
|
|
inserts.cpp
|
200
(12 years ago)
by gpertea:
|
|
inserts.h
|
200
(12 years ago)
by gpertea:
|
|
juncs_db.cpp
|
200
(12 years ago)
by gpertea:
|
|
junctions.cpp
|
200
(12 years ago)
by gpertea:
|
|
junctions.h
|
154
(12 years ago)
by gpertea:
massive update with Daehwan's work
|
|
library_stats.cpp
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
|
long_spanning_reads.cpp
|
206
(12 years ago)
by gpertea:
updated
|
|
map2gtf.cpp
|
200
(12 years ago)
by gpertea:
|
|
map2gtf.h
|
200
(12 years ago)
by gpertea:
|
|
mask_sam.cpp
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
|
prep_reads.cpp
|
207
(12 years ago)
by gpertea:
wip
|
|
qual.cpp
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
|
qual.h
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
|
reads.cpp
|
207
(12 years ago)
by gpertea:
wip
|
|
reads.h
|
207
(12 years ago)
by gpertea:
wip
|
|
sam2bam.cpp
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
|
sam_juncs.cpp
|
135
(12 years ago)
by gpertea:
wip - SplicedSAMHitFactory() still not implemented
|
|
segment_juncs.cpp
|
207
(12 years ago)
by gpertea:
wip
|
|
segments.h
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
|
sra_to_solid.py
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
|
timer.h
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
|
tokenize.cpp
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
|
tokenize.h
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
|
tophat
|
206
(12 years ago)
by gpertea:
updated
|
|
tophat_reports.cpp
|
206
(12 years ago)
by gpertea:
updated
|
|
utils.cpp
|
200
(12 years ago)
by gpertea:
|
|
utils.h
|
158
(12 years ago)
by gpertea:
|
|
wiggles.cpp
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
|
wiggles.h
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
