 ../
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SeqAn-1.3/
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209
(12 years ago)
by gpertea:
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FastaTools.cpp
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165
(12 years ago)
by gpertea:
sync back with Daehwan. Test bam_merge for memory leaks!
|
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FastaTools.h
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165
(12 years ago)
by gpertea:
sync back with Daehwan. Test bam_merge for memory leaks!
|
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GArgs.cpp
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29
(13 years ago)
by gpertea:
adding tophat source work
|
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GArgs.h
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29
(13 years ago)
by gpertea:
adding tophat source work
|
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GBase.cpp
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228
(12 years ago)
by gpertea:
wip - prefiltering fix
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GBase.h
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228
(12 years ago)
by gpertea:
wip - prefiltering fix
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GFaSeqGet.cpp
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228
(12 years ago)
by gpertea:
wip - prefiltering fix
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GFaSeqGet.h
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228
(12 years ago)
by gpertea:
wip - prefiltering fix
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GFastaIndex.cpp
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29
(13 years ago)
by gpertea:
adding tophat source work
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GFastaIndex.h
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29
(13 years ago)
by gpertea:
adding tophat source work
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GHash.hh
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228
(12 years ago)
by gpertea:
wip - prefiltering fix
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GList.hh
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228
(12 years ago)
by gpertea:
wip - prefiltering fix
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GStr.cpp
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228
(12 years ago)
by gpertea:
wip - prefiltering fix
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GStr.h
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228
(12 years ago)
by gpertea:
wip - prefiltering fix
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GTFToFasta.cpp
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165
(12 years ago)
by gpertea:
sync back with Daehwan. Test bam_merge for memory leaks!
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GTFToFasta.h
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165
(12 years ago)
by gpertea:
sync back with Daehwan. Test bam_merge for memory leaks!
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Makefile
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236
(12 years ago)
by gpertea:
sync, wip prep_reads
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align_status.cpp
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236
(12 years ago)
by gpertea:
sync, wip prep_reads
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align_status.h
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200
(12 years ago)
by gpertea:
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alphabet.h
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29
(13 years ago)
by gpertea:
adding tophat source work
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assert_helpers.h
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29
(13 years ago)
by gpertea:
adding tophat source work
|
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bam2fastx.cpp
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220
(12 years ago)
by gpertea:
working, writing rejected.bam
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bam_dump.cpp
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29
(13 years ago)
by gpertea:
adding tophat source work
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bam_merge.cpp
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237
(12 years ago)
by gpertea:
wip
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bed_to_juncs.py
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29
(13 years ago)
by gpertea:
adding tophat source work
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bwt2sam.cpp
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29
(13 years ago)
by gpertea:
adding tophat source work
|
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bwt_map.cpp
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206
(12 years ago)
by gpertea:
updated
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bwt_map.h
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200
(12 years ago)
by gpertea:
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closures.cpp
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233
(12 years ago)
by gpertea:
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closures.h
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239
(12 years ago)
by gpertea:
wip prep_reads.cpp, tophat
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codons.cpp
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29
(13 years ago)
by gpertea:
adding tophat source work
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codons.h
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29
(13 years ago)
by gpertea:
adding tophat source work
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common.cpp
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242
(12 years ago)
by gpertea:
wip!!!
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common.h
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242
(12 years ago)
by gpertea:
wip!!!
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config.h
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200
(12 years ago)
by gpertea:
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contig_to_chr_coords.py
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29
(13 years ago)
by gpertea:
adding tophat source work
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deletions.cpp
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236
(12 years ago)
by gpertea:
sync, wip prep_reads
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deletions.h
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236
(12 years ago)
by gpertea:
sync, wip prep_reads
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extract_reads.cpp
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135
(13 years ago)
by gpertea:
wip - SplicedSAMHitFactory() still not implemented
|
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fix_map_ordering.cpp
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242
(12 years ago)
by gpertea:
wip!!!
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fragments.cpp
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200
(12 years ago)
by gpertea:
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fragments.h
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200
(12 years ago)
by gpertea:
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fusions.cpp
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200
(12 years ago)
by gpertea:
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fusions.h
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200
(12 years ago)
by gpertea:
|
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gdna.cpp
|
228
(12 years ago)
by gpertea:
wip - prefiltering fix
|
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gdna.h
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228
(12 years ago)
by gpertea:
wip - prefiltering fix
|
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gff.cpp
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228
(12 years ago)
by gpertea:
wip - prefiltering fix
|
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gff.h
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239
(12 years ago)
by gpertea:
wip prep_reads.cpp, tophat
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gtf_juncs.cpp
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154
(13 years ago)
by gpertea:
massive update with Daehwan's work
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insertions.cpp
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239
(12 years ago)
by gpertea:
wip prep_reads.cpp, tophat
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insertions.h
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236
(12 years ago)
by gpertea:
sync, wip prep_reads
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inserts.cpp
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233
(12 years ago)
by gpertea:
|
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inserts.h
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239
(12 years ago)
by gpertea:
wip prep_reads.cpp, tophat
|
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juncs_db.cpp
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236
(12 years ago)
by gpertea:
sync, wip prep_reads
|
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junctions.cpp
|
200
(12 years ago)
by gpertea:
|
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junctions.h
|
154
(13 years ago)
by gpertea:
massive update with Daehwan's work
|
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library_stats.cpp
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29
(13 years ago)
by gpertea:
adding tophat source work
|
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long_spanning_reads.cpp
|
206
(12 years ago)
by gpertea:
updated
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map2gtf.cpp
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239
(12 years ago)
by gpertea:
wip prep_reads.cpp, tophat
|
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map2gtf.h
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236
(12 years ago)
by gpertea:
sync, wip prep_reads
|
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mask_sam.cpp
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239
(12 years ago)
by gpertea:
wip prep_reads.cpp, tophat
|
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prep_reads.cpp
|
244
(12 years ago)
by gpertea:
seems to work, before sync
|
|
qual.cpp
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
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qual.h
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
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reads.cpp
|
237
(12 years ago)
by gpertea:
wip
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reads.h
|
239
(12 years ago)
by gpertea:
wip prep_reads.cpp, tophat
|
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sam2bam.cpp
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
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sam_juncs.cpp
|
135
(13 years ago)
by gpertea:
wip - SplicedSAMHitFactory() still not implemented
|
|
segment_juncs.cpp
|
239
(12 years ago)
by gpertea:
wip prep_reads.cpp, tophat
|
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segments.h
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
|
sra_to_solid.py
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
|
timer.h
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
|
tokenize.cpp
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
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tokenize.h
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
|
tophat
|
244
(12 years ago)
by gpertea:
seems to work, before sync
|
|
tophat_reports.cpp
|
239
(12 years ago)
by gpertea:
wip prep_reads.cpp, tophat
|
|
utils.cpp
|
236
(12 years ago)
by gpertea:
sync, wip prep_reads
|
|
utils.h
|
158
(13 years ago)
by gpertea:
|
|
wiggles.cpp
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
|
wiggles.h
|
29
(13 years ago)
by gpertea:
adding tophat source work
|
