 ../
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proteinstructure/
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175
(17 years ago)
by duarte:
FIXED BUG in initialisation of fullLength when reading from file. In case of no sequence and nodes provided, was not getting correctly the maximum value for contacts. Now using the method getMaxContact from new class ContactList
NEW FUNCTIONALITY in Graph:
-New member variable modified
-New methods addEdge, delEdge, restrictContactsToMaxRange, restrictContactsToMinRange, getContacts, getNodes, copy
-Improved slightly the implementation of getEdgeNbh
FIXED BUG in initialisation of fullLenght when reading from file. In case of no sequence and nodes provided, was not getting correctly the maximum value for contacts. Now using the method getMaxContact from ContactList
New class ContactList
NEW FUNCTIONALITY in Graph:
-New member variable modified
-New methods addEdge, delEdge, restrictContactsToMaxRange, restrictContactsToMinRange, getContacts, getNodes, copy
-Improved slightly the implementation of getEdgeNbh
New method getRange in Contact
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tools/
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176
(17 years ago)
by duarte:
New static method getUserName and new constructor with only server and db
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Manifest.txt
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163
(17 years ago)
by stehr:
added Manifest
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exchangeOne.java
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168
(17 years ago)
by lappe:
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iterateNbhood.java
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170
(17 years ago)
by lappe:
Running version, takes graph_id and resnr as input
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iterateNbs.java
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174
(17 years ago)
by lappe:
original version to be saved ...
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iterateUpperNbhood.java
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171
(17 years ago)
by lappe:
version of iterateNBHood for the uppercase background info
pdb_reps_graph_4_2 for briefer output & calculation
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iterateUpperNbs.java
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173
(17 years ago)
by lappe:
running version summing delta Rank
still to implement sum(deltza) for entropy etc.
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listInfoGain.java
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167
(17 years ago)
by lappe:
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listInfoLoss.java
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160
(17 years ago)
by lappe:
tab-Formatted output added
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makeNbhTbl.java
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24
(18 years ago)
by stehr:
moved executables (classes with main function) to root directory
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maxInfoGain.java
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169
(17 years ago)
by lappe:
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minInfoGain.java
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149
(17 years ago)
by lappe:
min-info - functional
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testClusterConnection.java
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36
(18 years ago)
by duarte:
Now using constructor without key and createStatement with key, since createStatement without key is not allowed anymore (is now private)
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testGraph2Pml.java
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116
(17 years ago)
by filippis:
testGraph2Pml.java fixed according to changes made in Msdsd2Pdb.java
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testMySQLConnection.java
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107
(18 years ago)
by duarte:
Initial commit, Hello World MySQLConnection program for newcomers
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testPdb.java
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162
(17 years ago)
by duarte:
Updated test class for Pdb/Graph objects
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testPyMol.java
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114
(17 years ago)
by duarte:
Initial commit. PyMol API script example, also using our PymolServerOutputStream to send commands directly to server
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testPymolServer.java
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24
(18 years ago)
by stehr:
moved executables (classes with main function) to root directory
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