Basic Information
Gene ID 436756
Gene Name sox1a; si:dkey-58d5.1, zgc:92865
Full Name Transcription factor Sox-1a
Organism Danio rerio [7955]

Cross Reference
UniProt Q6DGL6 UniGene Dr.6453
PDB NULL OMIM NULL
KEGG dre:436756 UCSC NULL

Protein Interactions
DIP NULL
IntAct NULL
MINT NULL
STRING NULL

Ensembl/RefSeq
Transcript ID
Protein ID
Gene ID
ENSEMBL
REFSEQ

InterPro Annotation
Protein Program Term IPRS Start End Score Description
ENSDARP00000092797 Gene3D G3DSA:1.10.30.10 IPR009071 36 115 1.80e-40 High mobility group box domain
ENSDARP00000092797 Pfam PF00505 IPR009071 37 105 2.00e-26 High mobility group box domain
ENSDARP00000092797 Pfam PF12336 IPR022097 106 219 3.40e-12 Transcription factor SOX
ENSDARP00000092797 ProSiteProfiles PS50118 IPR009071 37 105 0.00e-00 High mobility group box domain
ENSDARP00000092797 SMART SM00398 IPR009071 36 106 6.80e-30 High mobility group box domain
ENSDARP00000092797 SUPERFAMILY SSF47095 IPR009071 27 109 0.00e-00 High mobility group box domain

Pfam Annotation
Protein Pfam ID E.value Name Description
ENSDARP00000092797 PF00505 1.1e-26 HMG_box HMG (high mobility group) box
ENSDARP00000092797 PF12336 3.4e-12 SOXp SOX transcription factor
ENSDARP00000092797 PF09011 4.6e-11 HMG_box_2 HMG-box domain

Gene Ontology Annotation
Protein Entry Name Space Description
ENSDARP00000092797 GO:0006351 biological_process transcription, DNA-templated
ENSDARP00000092797 GO:0006355 biological_process regulation of transcription, DNA-templated
ENSDARP00000092797 GO:0005634 cellular_component nucleus
ENSDARP00000092797 GO:0003677 molecular_function DNA binding
ENSDARP00000092797 GO:0003700 molecular_function sequence-specific DNA binding transcription factor activity

Orthologs
TAXID Organism Gene ID TAXID Organism Gene ID
10224 Saccoglossus kowalevskii 100303496 9986 Oryctolagus cuniculus 100349813
400682 Amphimedon queenslandica 100632156 10029 Cricetulus griseus 100759815
9555 Papio anubis 101022620 39432 Saimiri boliviensis 101037370
8083 Xiphophorus maculatus 102225865 7897 Latimeria chalumnae 102353566
13735 Pelodiscus sinensis 102443720 7668 Strongylocentrotus purpuratus 373202
9031 Gallus gallus 396105 8128 Oreochromis niloticus 100691128
31033 Takifugu rubripes 101073272 9913 Bos taurus 618135
9606 Homo sapiens 6656 69293 Gasterosteus aculeatus ENSGACG00000002889
9595 Gorilla gorilla ENSGGOG00000027572 9315 Macropus eugenii ENSMEUG00000016617
59463 Myotis lucifugus ENSMLUG00000000946 9258 Ornithorhynchus anatinus ENSOANG00000004458
30611 Otolemur garnettii ENSOGAG00000034416 9813 Procavia capensis ENSPCAG00000009165
43179 Ictidomys tridecemlineatus ENSSTOG00000011011 8364 Xenopus tropicalis ENSXETG00000001902
9598 Pan troglodytes 460869 10116 Rattus norvegicus 499593
9544 Macaca mulatta 696412 28377 Anolis carolinensis ENSACAG00000006346
9646 Ailuropoda melanoleuca ENSAMEG00000011029 9615 Canis familiaris ENSCAFG00000006137
9483 Callithrix jacchus ENSCJAG00000008401 10141 Cavia porcellus ENSCPOG00000022456
9361 Dasypus novemcinctus ENSDNOG00000023758 10020 Dipodomys ordii ENSDORG00000007481
9796 Equus caballus ENSECAG00000010653 9371 Echinops telfairi ENSETEG00000006366
9685 Felis catus ENSFCAG00000029205 8049 Gadus morhua ENSGMOG00000020606
9785 Loxodonta africana ENSLAFG00000030155 13616 Monodelphis domestica ENSMODG00000021292
8090 Oryzias latipes ENSORLG00000012110 9601 Pongo abelii ENSPPYG00000005512
9305 Sarcophilus harrisii ENSSHAG00000007719 9823 Sus scrofa ENSSSCG00000011771
99883 Tetraodon nigroviridis ENSTNIG00000013867 9478 Tarsius syrichta ENSTSYG00000001164
9739 Tursiops truncatus ENSTTRG00000004853

Paralogs
557661