MUMmer
From Bioinformatics.Org Wiki
| BioLinux | |
|---|---|
| Homepage | http://mummer.sourceforge.net/ |
| Source code | http://sourceforge.net/projects/mummer/ |
| Version | 3.22 |
| Contact email or mailing list | mummer-users@lists.sourceforge.net |
| Tags | Alignment, Genome scale |
| License | Artistic License |
| Packaging status | Unknown |
| Operating system | Linux |
| Architecture | |
MUMmer is a modular system for the rapid whole genome alignment of finished or draft sequence. Released as a package providing an efficient suffix tree library, seed-and-extend alignment, SNP detection, repeat detection, and visualization tools. Version 3.0 was developed by Stefan Kurtz, Adam Phillippy, Arthur L Delcher, Michael Smoot, Martin Shumway, Corina Antonescu and Steven L Salzberg - most of whom are at The Institute for Genomic Research in Maryland, USA. POSIX OS required.
