[BiO BB] Affymetrix Data

a.craig a.craig at imperial.ac.uk
Thu Jan 30 12:07:02 EST 2003


Dear List,

Does anyone know of any publicly available code for extracting individual
perfect match and mismatch intensities for each probe pair of an affymetrix
chip.

Best wishes,

Andrew Craig

-----Original Message-----
From: bio_bulletin_board-request at bioinformatics.org
[mailto:bio_bulletin_board-request at bioinformatics.org]
Sent: Thursday, January 30, 2003 5:01 PM
To: bio_bulletin_board at bioinformatics.org
Subject: BiO_Bulletin_Board digest, Vol 1 #395 - 1 msg


Send BiO_Bulletin_Board mailing list submissions to
	bio_bulletin_board at bioinformatics.org

To subscribe or unsubscribe via the World Wide Web, visit
	https://bioinformatics.org/mailman/listinfo/bio_bulletin_board
or, via email, send a message with subject or body 'help' to
	bio_bulletin_board-request at bioinformatics.org

You can reach the person managing the list at
	bio_bulletin_board-admin at bioinformatics.org

When replying, please edit your Subject line so it is more specific
than "Re: Contents of BiO_Bulletin_Board digest..."


Today's Topics:

   1. ACM PPDP'03 Call for Papers (Frank D. Valencia)

--__--__--

Message: 1
Date: Thu, 30 Jan 2003 14:17:49 +0100
From: "Frank D. Valencia" <frankv at it.uu.se>
To: Corrado Priami <priami at dit.unitn.it>
Cc: mt at sfc.keio.ac.jp, luca at microsoft.com, miyano at ims.u-tokyo.ac.jp,
	lincoln at csl.sri.com, gdp at dcs.ed.ac.uk, ina.koch at molgen.mpg.de,
	mh at informatik.tu-cottbus.de, olaf.wolkenhauer at umist.ac.uk,
	Finn.Drablos at sintef.no, mroux at pasteur.fr, priami at science.unitn.it,
	degano at di.unipi.it, baldari at unisi.it, ladbury at biochem.ucl.ac.uk,
	aviv at wisdom.weizmann.ac.il, valencia at cnb.uam.es,
	vschachter at hybrigenics.fr, lin at informatik.uni-rostock.de,
	Charles.Auffray at vjf.cnrs.fr, Alexander.Bockmayr at loria.fr,
	simon.plyte at pharmacia.com, Francois.Fages at inria.fr,
	danos at logique.jussieu.fr, edu at apbionet.org, abi at apbionet.org,
	abnet at angis.org.au, board at open-bio.org, i3c-pathways at www.i3c.org,
	necluster-l at necluster.org, moby-l at biomoby.org,
	bio_bulletin_board at bioinformatics.org,
	biodevelopers at bioinformatics.org, bioclusters at bioinformatics.org,
	announcements at vanbug.org, bioinf at vei.co.uk,
	bioinformatics at cs.uchicago.edu, announce at apbionet.org,
	discuss at apbionet.org, tchu at andrew.cmu.edu, gfc at cbmi.upmc.edu,
	cg09+ at andrew.cmu.edu, ddanks at ai.uwf.edu, dhandley at andrew.cmu.edu,
	mani at cbmi.upmc.edu, ODohertyR at msx.dept-med.pitt.edu, dgp+ at pitt.edu,
	jdramsey at andrew.cmu.edu, rsaavedra at ai.uwf.edu,
	rscheines at andrew.cmu.edu, nserban at andrew.cmu.edu, rbas at cs.cmu.edu,
	ps7z at andrew.cmu.edu, larry at stat.cmu.edu, wimberly3 at earthlink.net,
	cwyoo at cbmi.upmc.edu, jc12b at nih.gov, lauderdk at nigms.nih.gov,
	dg13w at nih.gov, pm4o at nih.gov, postowe at csr.nih.gov,
katzf at mail.nih.gov,
	m8p at nih.gov, mm539c at nih.gov, ellenliberman at nih.gov,
	goodp at mail.nih.gov, brooksl at exchange.nih.gov, twerym at nhlbi.nih.gov,
	df18s at nih.gov, me25t at nih.gov, rm69e at nih.gov, ck82j at nih.gov,
	swajar at nibib.nih.gov, sourwine at nibib.nih.gov, fhaseltine at aol.com,
	ks79x at nih.gov, Barry_Davis at nih.gov, ek17w at nih.gov,
	hydej at extra.niddk.nih.gov, ws22e at nih.gov, mh38f at nih.gov,
	y15o at nih.gov, hs38k at nih.gov, mc105x at nih.gov, ivaisman at gmu.edu,
	cjamison at gmu.edu, sjafri at gmu.edu, Jan.Verwer at cwi.nl,
	lilia.alberghina at unimib.it, dan at biomed.bm.technion.ac.il,
	hw at bio.vu.nl, brazma at ebi.ac.uk, Bo.Servenius at astrazeneca.com,
	inge at ii.uib.no, bpn at mbb.ki.se, johnson at abo.fi, tmargus at ebc.ee,
	nikob at cbs.dtu.dk, ukkonen at cs.helsinki.fi, vissing at exiqon.com,
	daniel at decode.is, peleg at smi.stanford.edu, yeh at smi.stanford.edu,
	apo at gbf.de, acl2 at cs.utexas.edu, H.Schmidt at DKFZ-Heidelberg.de,
	agents at cs.umbc.edu, aiia at di.unito.it, alg at comm.toronto.edu,
	amast at cs.utwente.nl, announce at tcos.org, andrea.massa at ing.unitn.it,
	alessandro.bogliolo at uniurb.it, announcements.chi at acm.com,
	appiar at ncc.up.pt, atp at logic.tuwien.ac.at, asci at twi.tudelft.nl,
	bra-types at cs.chalmers.se, categories at mta.ca, ccl at dfki.uni-sb.de,
	clp at iscs.nus.edu.sg, cofi-reactive at brics.dk, comm-theory at ieee.org,
	concurrency at cwi.nl, conf at colmar.uha.fr,
	confs-conferencesa at comsoc.org, coq at margaux.inria,
	coq-club at pauillac.inria.fr, cs-logic at cs.indiana.edu,
	csl at dbai.tuwien.ac.at, csp at carlit.toulouse.inra.fr,
	dataloger at cs.chalmers.se, eacsl at dimi.uniud.it,
	frdist-obj at distributedcoalition.org, eapls-request at mailbase.ac.uk,
	eatcs-it-l at unifi.it, eatcs-it at cs.unibo.it, ecoop-info at ecoop.org,
	facs at lboro.ac.uk, eapls at jiscmail.ac.uk, ercim at cnuce.cnr.it,
	behavior at cs.ucsd.edu, formal-methods at cs.uidaho.edu,
	fsdm at it.uq.edu.au, ifip-tc6 at informatik.rwth-aachen.de,
	info-confs at comsoc.org, a_kapela at heart.med.upatras.gr,
	hise-safety-critical at minster.cs.york.ac.uk, ifmsig at cs.tcd.ie,
	info-hol at ultimate.cs.byu.edu, isabelle-users at cl.cam.ac.uk,
	jml at cs.iastate.edu, lambda-usergroup at dcs.ed.ac.uk,
	lfcs-interest at dcs.ed.ac.uk, itc at comsoc.org,
logic at theory.lcs.mit.edu,
	news-announce-conferences at uunet.uu.net, softverf at nist.gov,
	lics at research.bell-labs.com, logic-announce at uclink4.berkeley.edu,
	logic-ml at logic.jaist.ac.jp, logic at cs.cornell.edu,
	lotos-world at sanson.dit.upm.es, nqthm-users at cli.com,
	nuprllist at cs.cornell.edu, nvti-list at cwi.nl, nwpt-info at sool.ioc.ee,
	om-announce at lars.math.fsu.edu, papm at dcs.ed.ac.uk,
	performance at haven.epm.ornl.gov, PetriNets at daimi.aau.dk,
	prog-lang at daimi.aau.dk, prog-lang at diku.dk, pvs at csl.sri.com,
	qed at mcs.anl.gov, reliable_computing at interval.usl.edu,
	rewriting at ens-lyon.fr, seworld at cs.colorado.edu,
	stochver at cs.bham.ac.uk, system-safety at listserv.gsfc.nasa.gov,
	theorem-provers at ai.mit.edu, theory-a at vm1.nodak.edu,
	theorynt at listserv.nodak.edu, vdm-forum at jiscmail.ac.uk,
	zeves at ora.on.ca, zforum at prg.ox.ac.uk, Bart.Jacobs at cs.kun.nl,
	comp-all at comp.lancs.ac.uk, traverso at itc.it, luca.degioia at unimib.it,
	milanesi at itba.mi.cnr.it, paolo at dsi.unifi.it, furlan at itc.it,
	laura.bonati at unimib.it, webmaster at systemsbiology.org,
	Lchalif at bioinformatics.weizmann.ac.il, Info at isb-sib.ch,
	Roslin.Bioinformatics at bbsrc.ac.uk, robin_deacle at ncbiotech.org,
	cubic at maple.bioc.columbia.edu, staff at sbc.su.se,
	drg at brc.dcs.gla.ac.uk, support at ebi.ac.uk,
admin at mail.cryst.bbk.ac.uk,
	Queries at bioinf.man.ac.uk, director at bioinfo.ernet.in,
	winhide at sanbi.ac.za, info at sanbi.ac.za, brutlag at stanford.edu,
	kanehisa at kuicr.kyoto-u.ac.jp, goto at kuicr.kyoto-u.ac.jp,
	nakaya at kuicr.kyoto-u.ac.jp, shuichi at kuicr.kyoto-u.ac.jp,
	kaede at kuicr.kyoto-u.ac.jp, yuko at scl.kyoto-u.ac.jp,
	chiaki at scl.kyoto-u.ac.jp, asako at scl.kyoto-u.ac.jp,
	okuno at kuicr.kyoto-u.ac.jp, adeline at kuicr.kyoto-u.ac.jp,
	hirakawa at kuicr.kyoto-u.ac.jp, park at kuicr.kyoto-u.ac.jp,
	hattori at kuicr.kyoto-u.ac.jp, igarashi at kuicr.kyoto-u.ac.jp,
	katayama at kuicr.kyoto-u.ac.jp, acyshzw at kuicr.kyoto-u.ac.jp,
	kot at kuicr.kyoto-u.ac.jp, minowa at kuicr.kyoto-u.ac.jp,
	itoh at kuicr.kyoto-u.ac.jp, hizukuri at kuicr.kyoto-u.ac.jp,
	yoshi at kuicr.kyoto-u.ac.jp, takuji at kuicr.kyoto-u.ac.jp,
	okuda at kuicr.kyoto-u.ac.jp, rikuhiro at kuicr.kyoto-u.ac.jp,
	moriya at kuicr.kyoto-u.ac.jp, fujita at kuicr.kyoto-u.ac.jp,
	sato at kuicr.kyoto-u.ac.jp, naobumi at kuicr.kyoto-u.ac.jp,
	mtanaka at kuicr.kyoto-u.ac.jp, nati at kuicr.kyoto-u.ac.jp,
	toshi at scl.kyoto-u.ac.jp, tomomi at scl.kyoto-u.ac.jp,
	sanae at scl.kyoto-u.ac.jp, kayo at scl.kyoto-u.ac.jp,
	tomoko at scl.kyoto-u.ac.jp, nobue at scl.kyoto-u.ac.jp,
	megumi at scl.kyoto-u.ac.jp, rumiko at scl.kyoto-u.ac.jp,
	atsuko at scl.kyoto-u.ac.jp, junko at scl.kyoto-u.ac.jp,
	yuriko at scl.kyoto-u.ac.jp, yumi at scl.kyoto-u.ac.jp,
	njunko at scl.kyoto-u.ac.jp, miho at scl.kyoto-u.ac.jp,
	ktomoko at scl.kyoto-u.ac.jp, kana at scl.kyoto-u.ac.jp,
	fukumoto at scl.kyoto-u.ac.jp, kanae at scl.kyoto-u.ac.jp,
	kshirais at scl.kyoto-u.ac.jp, nishikaw at scl.kyoto-u.ac.jp,
	ohkubo at scl.kyoto-u.ac.jp, uehara at scl.kyoto-u.ac.jp,
	tonomura at scl.kyoto-u.ac.jp, furuta at scl.kyoto-u.ac.jp,
	konya at scl.kyoto-u.ac.jp, yamazaki at scl.kyoto-u.ac.jp,
	bioinformatics at ireland.com, rserra at oramont.it, axa at cs.purdue.edu,
	casadio at kaiser.alma.unibo.it, Heiko.Mueller at eu.pnu.com,
	Valencia at cnb.vam.es, Farisel at kaiser.alma.unibo.it,
	gigi at lipid.biocomp.unibo.it, soda at dsi.unifi.it, vullo at dsi.unifi.it,
	alex at mcculloch.ing.unifi.it, h-wilson at tamu.edu, jherreo at cnio.es,
	aadil_raiyan at usa.net, ponarul at usa.net,
rajnishgupta73 at radiffmail.com,
	ewi at gbf.de, abi at gbf.de, kse at gbf.de, hom at gbf.de, ili at gbf.de,
	tcr at gbf.de, mch at gbf.de, ksl at gbf.de, vdr at gbf.de, dtj at cs.ucl.ac.uk,
	lmiller at cs.iastate.edu, lhb at iastate.edu, xgai at iastate.edu,
	melon at iq.usp.br, info at bioinformatics.buffalo.edu, info at ki.se,
	sdavids at uwc.ac.za, steipe at lmb.uni-muenchen.de,
	twclark at cs.uchicago.edu, ncox at genetics.bsd.uchicago.edu,
	s-endy at uchicago.edu, efrank at hep.uchicago.edu,
	dhl at genetics.bsd.uchicago.edu, rquigg at medicine.bsd.uchicago.edu,
	ridg at cs.uchicago.edu
Subject: [BiO BB] ACM PPDP'03 Call for Papers
Reply-To: bio_bulletin_board at bioinformatics.org


Dear all,

Apologies for multiple copies of this message. Please circulate the 
following call for papers to colleagues. 

Best wishes,
  Frank D. Valencia. 

-------------------
			   Call for Papers
	    Fifth ACM-SIGPLAN International Conference on
	 Principles and Practice of Declarative Programming
		  Uppsala, Sweden, 27-29 August 2003

IMPORTANT DATES 
 Submission      29 March 2003
 Notification    12 May   2003
 Final Version   13 June  2003
 
WEB SITES 
 PPDP 2003: http://www.it.uu.se/ppdp03/
 PLI 2003:  http://www.it.uu.se/pli03/ 
 PPDP:      http://pauillac.inria.fr/~fages/PPDP/.

TOPICS (Not exhaustive): Logic and Constraint Programming; Functional
 Programming; Object-Oriented Programming; Concurrent Extensions;
 Mobile Computing; Integration of Paradigms; Proof Theoretic and
 Semantic Foundations; Program Design and Development; Type and Module
 Systems; Program Analysis and Verification; Program Transformation;
 Abstract Machines and Compilation; Programming Environments; and
 Application of Declarative Programming.

CONFERENCE CHAIR: Konstantinos Sagonas, Uppsala University
   http://www.csd.uu.se/~kostis, email: kostis at it.uu.se

PROGRAM CHAIR: Dale Miller, INRIA/Futurs & Ecole polytechnique
   http://www.lix.polytechnique.fr/Labo/Dale.Miller, 
   email: Dale.Miller at inria.fr

PROGRAM COMMITTEE 
  Maria Alpuente,           Univ. Politecnica de Valencia,     ES
  Alessandra Di Pierro,     Univ. of Pisa,                     IT
  Masami Hagiya,            Univ. of Tokyo,                    JP
  Fergus Henderson,         Univ. of Melbourne,                AU
  Alberto Momigliano,       Univ. of Leicester,                UK
  Benjamin Pierce,          Univ. of Pennsylvania,             US
  C.R. Ramakrishnan,        SUNY Stony Brook,                  US
  Mario Rodriguez Artalejo, Univ. Complutense,                 ES
  Amr Sabry,                Univ. of Indiana,                  US
  Konstantinos Sagonas,     Uppsala University,                SW
  Frank Valencia,           Uppsala University,                SW

PREVIOUS PPDP CONFERENCES 
 Paris (1999), Montreal (2000), Firenze (2001), Pittsburgh (2002).

SCOPE OF THE CONFERENCE: PPDP 2003 aims to stimulate research in the
use of logical formalisms and methods for analyzing, specifying, and
performing computations.  Of general interest are all aspects
surrounding declarative programming paradigms such as logic
programming, functional logic programming, and constraint programming.
Topics of more specific interest are enhancements to such formalisms
with mechanisms for concurrency, mobility, modularity,
object-orientation, and static analysis, as well as the fuller
exploitation of the programming-as-proof-search framework through new
designs and improved implementation methods.  At the level of
methodology, the use of logic based principles in the design of tools
for program development, analysis, and verification relative to all
programming paradigms is of interest.  Papers related to the use of
declarative paradigms and tools in industry and education are
especially solicited.  This list is not exhaustive: submissions
related to new and interesting ideas relating broadly to declarative
programming are encouraged.  Prospective authors are welcome to
communicate with the Program Chair about the suitability of a specific
topic.

PAPER SUBMISSIONS: Submissions must be made on or before 29 March
2003, noon Central European Time and must be no more than 12 pages
(including bibliography and appendices) and in standard ACM conference
format: detailed formatting guidelines are available at
http://www.acm.org/sigs/pubs/proceed/template.html, along with
formatting templates or style files for LaTeX, Word Perfect, and Word.
Proceedings will be published by ACM Press.  Authors of accepted
papers will be required to sign the ACM copyright form.  Submissions
will be carried out electronically via the Web via a link found at the
conference web page.  Papers must be submitted in either PDF format or
as PostScript documents that are interpretable by Ghostscript.  Papers
must describe original, previously unpublished work that has not been
simultaneously submitted for publication elsewhere.  They must be
written in English, must have a cover page with an abstract of up to
200 words, keywords, postal and electronic mailing addresses, and
phone and fax numbers of the corresponding author.  Authors who wish
to provide additional material to the reviewers beyond the 12-page
limit can do so in clearly marked appendices: reviewers are not
required to read such appendices.  Submissions that do not meet these
guidelines may not be considered.

CONFERENCE VENUE AND RELATED EVENTS: PPDP 2003 is part of a federation
meeting known as Principles, Logics and Implementations of high-level
programming languages (PLI 2003) which includes the ACM SIGPLAN
International Conference on Functional Programming (ICFP 2003).  PLI
will run from 25 - 29 August 2003.  The meetings will take place on
the Uppsala University campus.

AFFILIATED WORKSHOPS: Proposals are solicited for PLI 2003 affiliated
workshops.  Details about the submission of proposals are available
from the PLI 2003 web site.  The deadline for workshop proposals is 14
February 2003.

STUDENT ATTENDEES: Students who have a paper accepted for the
conference are offered student membership in SIGPLAN free for one
year.  As members of SIGPLAN they may apply for travel fellowships
from the PAC fund.




-- 
=========================================================================
Frank D. Valencia
PostDoctoral Researcher in Computer Science
Uppsala University,  Sweden.
office phone: +46 18 471 1030
mobile: +46 7358 20376
e-mai: frankv at it.uu.se
http://user.it.uu.se/~frankv
==========================================================================





--__--__--

_______________________________________________
BiO_Bulletin_Board maillist  -  BiO_Bulletin_Board at bioinformatics.org
https://bioinformatics.org/mailman/listinfo/bio_bulletin_board


End of BiO_Bulletin_Board Digest



More information about the BBB mailing list