[BiO BB] Pfam list for Fe/Zn binding
dmb at mrc-dunn.cam.ac.uk
Tue Apr 6 17:33:00 EDT 2004
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On Tue, 6 Apr 2004, Hongyu Zhang wrote:
> I am wondering whether anybody has a collection of all Pfam families that
> contains proteins binding to Fe or Zn. I have by myself compiled a list using
> key word search like "Fe", "Iron" etc., from the Pfam description and comments.
> However, it turned out that I missed those proteins like P450 which has heme
> cofactors but does not have specific "Fe" or "Iron" keyword in its Pfam
> Anyway, my original goal is to find all the proteins in a private protein
> database that bind to either Fe or Zn, so I tried Pfam first. Maybe I could
> also try GO annotation, but I would run into the similar problem.
> Can anyone here give me some advice how to accomplish that in a straightforward
> way? Thanks in advance.
> Hongyu Zhang
> BiO_Bulletin_Board maillist - BiO_Bulletin_Board at bioinformatics.org
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