[BiO BB] Re: ID converter (Alias Server)

[Ian Donaldson]

Hi Sook

Have you looked at this file

ftp://ftp.geneontology.org/pub/go/gp2protein/gp2protein.tigr_ath

Thats what we use for our dbxref module for Arabidopsis.

Ian
www.blueprint.org/seqhound

-----Original Message-----
From:
bio_bulletin_board-bounces+ian.donaldson=blueprint.org at bioinformatics.or
g
[mailto:bio_bulletin_board-bounces+ian.donaldson=blueprint.org at bioinform
atics.org]On Behalf Of Sook Jung
Sent: January 21, 2005 2:31 PM
To: bio_bulletin_board at bioinformatics.org
Subject: [BiO BB] Re: ID converter (Alias Server)


Dear Nicolas,

Thanks for the reply.
Somehow I can't get it to work for me. Could you tell me if there's
something that I'm doing incorrectly?

For example, I pasted in an arabidopsis genbank acc (AAO22800), selected
'GENBANK_AC' and selected 'GENE NAME'. It just says 'No results!' along
with all the organism names. It didn't work when I selected 'GI' or 'All'
as the identifier type in result.
I made a file with a couple of genbank accesions in the right format
(reparated by @, no space no carrage return, etc), but it only gave me the
error message  starting with lines below.
ERROR
The requested URL could not be retrieved

I'll really appreciate your help.

Sook


> Se have developed a tool named AliasServer :
> http://cbi.labri.fr/outils/alias/ for this kind of conversion.
>
> Nicolas
>
> Sook Jung wrote:
>> Hello,
>>
>> Are there any ID converter that can convert the
>> Genbank Acc to AGI(arabidopsis genome initiative) name
>> (eg. AT5G63390) in batch or just a file that lists
>> both of those IDs for all the arabidopsis genes?
>>
>> Thanks,

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