[BiO BB] Re: ID converter (Alias Server)
idonalds at blueprint.org
Mon Jan 24 11:53:21 EST 2005
Have you looked at this file
Thats what we use for our dbxref module for Arabidopsis.
bio_bulletin_board-bounces+ian.donaldson=blueprint.org at bioinformatics.or
[mailto:bio_bulletin_board-bounces+ian.donaldson=blueprint.org at bioinform
atics.org]On Behalf Of Sook Jung
Sent: January 21, 2005 2:31 PM
To: bio_bulletin_board at bioinformatics.org
Subject: [BiO BB] Re: ID converter (Alias Server)
Thanks for the reply.
Somehow I can't get it to work for me. Could you tell me if there's
something that I'm doing incorrectly?
For example, I pasted in an arabidopsis genbank acc (AAO22800), selected
'GENBANK_AC' and selected 'GENE NAME'. It just says 'No results!' along
with all the organism names. It didn't work when I selected 'GI' or 'All'
as the identifier type in result.
I made a file with a couple of genbank accesions in the right format
(reparated by @, no space no carrage return, etc), but it only gave me the
error message starting with lines below.
The requested URL could not be retrieved
I'll really appreciate your help.
> Se have developed a tool named AliasServer :
> http://cbi.labri.fr/outils/alias/ for this kind of conversion.
> Sook Jung wrote:
>> Are there any ID converter that can convert the
>> Genbank Acc to AGI(arabidopsis genome initiative) name
>> (eg. AT5G63390) in batch or just a file that lists
>> both of those IDs for all the arabidopsis genes?
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