[Bioclusters] mpiBLAST compile error

[Pamela Culpepper]

Get the NCBI C language toolbox from the NCBI ftp site.  

They are in the include directory.

If you need help compiling, I am very familiar with the insanities of 
this approach.

Pam Culpepper
Sr. Systems Programmer
Biomedical Computing Facility
Baylor College of Medicine

Jones George wrote:

>Hello,
>
>Does anyone know where I can get the complete NCBI ToolKit 
>that contains these header files:
>
>xmlblast.h, mblast.h, objblst3.h, netblap3.h
>
>
>Thanks,
>Jones
>
>
>  
>
>>>>JBGeorge@wyeth.com 03/03/03 01:43PM >>>
>>>>        
>>>>
>Joe,
>
>I found the RPM at:
>
>http://rpmfind.net/linux/RPM/contrib/libc6/i386/ncbi-6.0-1.i386.html 
>
>I will try installing the direct toolkit.. will update on how it goes..
>
>-Jones
>
>  
>
>>>>landman@scalableinformatics.com 02/28/03 05:22PM >>>
>>>>        
>>>>
>Hi Jones:
>
>  Either from the direct toolkit, or I can craft a source RPM to go with 
>my binary RPMs (http://scalableinformatics.com/downloads/).  Where did 
>you get the blast RPM BTW?
>
>Joe
>
>Jones George wrote:
>  
>
>>Joe,
>>Thanks for the clarification.
>>
>>I do not have this file on the system.. anywhere...
>>
>>i do not have: xmlblast.h, mblast.h, objblst3.h, netblap3.h
>>
>>I am trying to understand why they are not part of:
>>
>>ncbi-6.0-1 RPM...
>>
>>Maybe I need to reinstall install the toolkit from some other source..
>>
>>any recommendations?
>>
>>Thanks,
>>jones
>>
>>
>>
>>
>>    
>>
>>>>>landman@scalableinformatics.com 02/28/03 04:56PM >>>
>>>>>          
>>>>>
>>Jones:
>>
>>   These are not libraries, but C header files.  On your system, try
>>
>>	locate xmlblast.h
>>
>>and see if you see it anywhere.  If so, add a pointer to this file in 
>>your Makefile.
>>
>>	-I/path/to/include/files
>>
>>along with the other paths that they have there for include directories.
>>
>>Joe
>>
>>--
>>Joseph Landman, Ph.D
>>Scalable Informatics LLC,
>>email: landman@scalableinformatics.com 
>>web  : http://scalableinformatics.com 
>>phone: +1 734 612 4615
>>
>>Jones George wrote:
>>
>>    
>>
>>>I understand.. but I installed the  RPM
>>>and these 4 libs were not installed.
>>>I cannot find them anywhere in the system.
>>>
>>>
>>>
>>>      
>>>
>>>>>>landman@scalableinformatics.com 02/28/03 04:30PM >>>
>>>>>>            
>>>>>>
>>>These files are located in  ncbi/include/ from the toolkit source.
>>>
>>>
>>>
>>>_______________________________________________
>>>Bioclusters maillist  -  Bioclusters@bioinformatics.org 
>>>https://bioinformatics.org/mailman/listinfo/bioclusters 
>>>
>>>_______________________________________________
>>>Bioclusters maillist  -  Bioclusters@bioinformatics.org 
>>>https://bioinformatics.org/mailman/listinfo/bioclusters 
>>>      
>>>
>>
>>_______________________________________________
>>Bioclusters maillist  -  Bioclusters@bioinformatics.org 
>>https://bioinformatics.org/mailman/listinfo/bioclusters 
>>
>>_______________________________________________
>>Bioclusters maillist  -  Bioclusters@bioinformatics.org 
>>https://bioinformatics.org/mailman/listinfo/bioclusters 
>>    
>>
>
>  
>