hi guys i am interested to join beta tester group. i am presently graduate student =2E my work involve large scvale genome comparison and lot of wet lab work of making trasgenic work. for genome comarison i keep writing small scripts.=20 feel free to contact me. thanking you.=20 with regards Bony De Kumar National facility for transgenic and gene knock out mice Lab#N301 CCMB, Uppal Road Hyderabad 500 007 Phone91-040-27192899 91-040-27160222-41(20 lines) Bony at ccmb.res.in Inbo at rediffmail.com =20 On Thu, 11 Aug 2005 bioclusters-request at bioinformatics.org wrote: > Send Bioclusters mailing list submissions to > =09bioclusters at bioinformatics.org >=20 > To subscribe or unsubscribe via the World Wide Web, visit > =09https://bioinformatics.org/mailman/listinfo/bioclusters > or, via email, send a message with subject or body 'help' to > =09bioclusters-request at bioinformatics.org >=20 > You can reach the person managing the list at > =09bioclusters-owner at bioinformatics.org >=20 > When replying, please edit your Subject line so it is more specific > than "Re: Contents of Bioclusters digest..." >=20 >=20 > Today's Topics: >=20 > 1. re: software skills course (Brian Cole) > 2. re: software skills course (Tim Booth) > 3. Re: re: software skills course (Vsevolod (Simon) Ilyushchenko) > 4. RE: re: software skills course (Brodie, Kent) > 5. Re: re: software skills course (Bob Gimlich) > 6. Xserve Cluster setup (Nnabugwu, Ike (NIH/NIAMS)) > 7. Re: Xserve Cluster setup (Chris Dagdigian) > 8. Re: re: software skills course (Richard Wonka) >=20 >=20 > ---------------------------------------------------------------------- >=20 > Message: 1 > Date: Wed, 10 Aug 2005 12:37:21 -0400 > From: "Brian Cole" <COLEB2 at wyeth.com> > Subject: [Bioclusters] re: software skills course > To: <bioclusters at bioinformatics.org> > Message-ID: <s2f9f53d.012 at ra01m42.gv.us.pri.wyeth.com> > Content-Type: text/plain; charset=3DUS-ASCII >=20 > I'm a contractor in pharmaceutical research for computational chemists. M= uch of my job involves improving code written by scientists. As a result I = also end up teaching them a lot along the way. I use mostly python to do my= work and others in the group have expressed interest in becoming more prof= icient at python. I would be greatly interesting in reviewing anything you = develop, please keep me informed.=20 >=20 > Thanks, > Brian >=20 > >>> gvwilson at cs.utoronto.ca 8/10/2005 7:58:27 AM >>> > Hi, >=20 > I'm working with support from the Python Software Foundation to develop > an open source course on basic software development skills for people > with backgrounds in science and engineering. I have a beta version of > the course notes ready for review, and would like to pull in people > in sci&eng to look it over and give me feedback. If you know anyone > who fits this bill (particularly people who might be interested in > following along with a trial run of the course this fall), I'd be > grateful for pointers. >=20 > Thanks, > Greg Wilson >=20 > _______________________________________________ > Bioclusters maillist - Bioclusters at bioinformatics.org=20 > https://bioinformatics.org/mailman/listinfo/bioclusters >=20 >=20 >=20 > ------------------------------ >=20 > Message: 2 > Date: Wed, 10 Aug 2005 17:41:17 +0100 > From: Tim Booth <tbooth at ceh.ac.uk> > Subject: [Bioclusters] re: software skills course > To: bioclusters at bioinformatics.org > Cc: gvwilson at cs.utoronto.ca, Bela Tiwari <btiwari at ceh.ac.uk>,=09Joe Wood > =09<anjw at ceh.ac.uk> > Message-ID: <1123692077.24081.25.camel at ivpcp044.nox.ac.uk> > Content-Type: text/plain >=20 > Hi Greg + list people, >=20 > As part of a bioinformatics group in Oxford, UK, I was involved in > putting on a similar (2 day) course in Perl. The notes and exercises > are on the web: >=20 > http://envgen.nox.ac.uk/envgen/training/archives/000445.html >=20 > The audience ranged from complete programming novices to some with > moderate coding experience, so we got some good feedback on how the > scientists approached the programming concepts, though we didn't cover > anything particularly advanced or get into software design, > re-usability, testing regimes etc. >=20 > Also, though I have been programming for years I have never got around > to learning Python so this looks like a great time to learn the basics > while reviewing your notes. I don't think I'll be able to make it over > for the trial run of the course :-( but I'd really like to see the > materials, and will send feedback. I may even be able to find a real > scientist to try them out on! >=20 > Cheers, >=20 > TIM >=20 > > Message: 1 > > Date: Wed, 10 Aug 2005 07:58:27 -0400 > > From: Greg Wilson <gvwilson at cs.utoronto.ca> > > Subject: [Bioclusters] re: software skills course > > To: bioclusters at bioinformatics.org > > Message-ID: <ddcpug$a08$6 at sea.gmane.org> > > Content-Type: text/plain; charset=3DISO-8859-1; format=3Dflowed > >=20 > > Hi, > >=20 > > I'm working with support from the Python Software Foundation to develop > > an open source course on basic software development skills for people > > with backgrounds in science and engineering. I have a beta version of > > the course notes ready for review, and would like to pull in people > > in sci&eng to look it over and give me feedback. If you know anyone > > who fits this bill (particularly people who might be interested in > > following along with a trial run of the course this fall), I'd be > > grateful for pointers. > >=20 > > Thanks, > > Greg Wilson > >=20 >=20 >=20 >=20 >=20 > ------------------------------ >=20 > Message: 3 > Date: Wed, 10 Aug 2005 13:45:34 -0400 > From: "Vsevolod (Simon) Ilyushchenko" <simonf at cshl.edu> > Subject: Re: [Bioclusters] re: software skills course > To: "Clustering,=09compute farming & distributed computing in life > =09science informatics"=09<bioclusters at bioinformatics.org> > Message-ID: <42FA3D3E.2090901 at cshl.edu> > Content-Type: text/plain; charset=3Dus-ascii; format=3Dflowed >=20 > Greg, >=20 > I can help review the materials - I work in IT in a biological lab, I'm= =20 > involved in Perl development myself and help a number of scientists with= =20 > their projects. >=20 > Simon >=20 > Greg Wilson wrote on 08/10/2005 07:58 AM: > > Hi, > >=20 > > I'm working with support from the Python Software Foundation to develop > > an open source course on basic software development skills for people > > with backgrounds in science and engineering. I have a beta version of > > the course notes ready for review, and would like to pull in people > > in sci&eng to look it over and give me feedback. If you know anyone > > who fits this bill (particularly people who might be interested in > > following along with a trial run of the course this fall), I'd be > > grateful for pointers. > >=20 > > Thanks, > > Greg Wilson > >=20 > > _______________________________________________ > > Bioclusters maillist - Bioclusters at bioinformatics.org > > https://bioinformatics.org/mailman/listinfo/bioclusters > >=20 >=20 > --=20 >=20 > Simon (Vsevolod ILyushchenko) simonf at cshl.edu > =09=09=09=09http://www.simonf.com >=20 > Terrorism is a tactic and so to declare war on terrorism > is equivalent to Roosevelt's declaring war on blitzkrieg. >=20 > Zbigniew Brzezinski, U.S. national security advisor, 1977-81 >=20 >=20 > ------------------------------ >=20 > Message: 4 > Date: Wed, 10 Aug 2005 12:56:48 -0500 > From: "Brodie, Kent" <brodie at mcw.edu> > Subject: RE: [Bioclusters] re: software skills course > To: "Clustering,=09compute farming & distributed computing in life > =09science informatics"=09<bioclusters at bioinformatics.org> > Message-ID: <8F78639AC56F4143B267FE5F5A1B92C8C59B at guyton.phys.mcw.edu> > Content-Type: text/plain;=09charset=3D"us-ascii" >=20 > Hey! Very cool for us perl-newbies. :-) Much appreciated. =20 >=20 > > -----Original Message----- > > From: bioclusters-bounces+brodie=3Dmcw.edu at bioinformatics.org > > [mailto:bioclusters-bounces+brodie=3Dmcw.edu at bioinformatics.org] On > Behalf > > Of Tim Booth > > Sent: Wednesday, August 10, 2005 11:41 AM > > To: bioclusters at bioinformatics.org > > Cc: gvwilson at cs.utoronto.ca; Bela Tiwari; Joe Wood > > Subject: [Bioclusters] re: software skills course > >=20 > > Hi Greg + list people, > >=20 > > As part of a bioinformatics group in Oxford, UK, I was involved in > > putting on a similar (2 day) course in Perl. The notes and exercises > > are on the web: > >=20 > > http://envgen.nox.ac.uk/envgen/training/archives/000445.html > >=20 > > The audience ranged from complete programming novices to some with > > moderate coding experience, so we got some good feedback on how the > > scientists approached the programming concepts, though we didn't cover > > anything particularly advanced or get into software design, > > re-usability, testing regimes etc. > >=20 > > Also, though I have been programming for years I have never got around > > to learning Python so this looks like a great time to learn the basics > > while reviewing your notes. I don't think I'll be able to make it > over > > for the trial run of the course :-( but I'd really like to see the > > materials, and will send feedback. I may even be able to find a real > > scientist to try them out on! > >=20 > > Cheers, > >=20 > > TIM > >=20 > > > Message: 1 > > > Date: Wed, 10 Aug 2005 07:58:27 -0400 > > > From: Greg Wilson <gvwilson at cs.utoronto.ca> > > > Subject: [Bioclusters] re: software skills course > > > To: bioclusters at bioinformatics.org > > > Message-ID: <ddcpug$a08$6 at sea.gmane.org> > > > Content-Type: text/plain; charset=3DISO-8859-1; format=3Dflowed > > > > > > Hi, > > > > > > I'm working with support from the Python Software Foundation to > develop > > > an open source course on basic software development skills for > people > > > with backgrounds in science and engineering. I have a beta version > of > > > the course notes ready for review, and would like to pull in people > > > in sci&eng to look it over and give me feedback. If you know anyone > > > who fits this bill (particularly people who might be interested in > > > following along with a trial run of the course this fall), I'd be > > > grateful for pointers. > > > > > > Thanks, > > > Greg Wilson > > > > >=20 > >=20 > > _______________________________________________ > > Bioclusters maillist - Bioclusters at bioinformatics.org > > https://bioinformatics.org/mailman/listinfo/bioclusters >=20 >=20 > ------------------------------ >=20 > Message: 5 > Date: Wed, 10 Aug 2005 14:48:13 -0400 > From: Bob Gimlich <gimlich at gmail.com> > Subject: Re: [Bioclusters] re: software skills course > To: "Clustering,=09compute farming & distributed computing in life > =09science informatics"=09<bioclusters at bioinformatics.org> > Message-ID: <88b98a9e05081011485227ce0e at mail.gmail.com> > Content-Type: text/plain; charset=3DISO-8859-1 >=20 > Greg, >=20 > I'd be interested in reviewing. What do you mean by 'following along > with a trial run of the course'? An online trial run? >=20 > Bob Gimlich (http://gimlich.com) >=20 > On 8/10/05, Greg Wilson <gvwilson at cs.utoronto.ca> wrote: > > Hi, > >=20 > > I'm working with support from the Python Software Foundation to develop > > an open source course on basic software development skills for people > > with backgrounds in science and engineering. I have a beta version of > > the course notes ready for review, and would like to pull in people > > in sci&eng to look it over and give me feedback. If you know anyone > > who fits this bill (particularly people who might be interested in > > following along with a trial run of the course this fall), I'd be > > grateful for pointers. > >=20 > > Thanks, > > Greg Wilson > >=20 > > _______________________________________________ > > Bioclusters maillist - Bioclusters at bioinformatics.org > > https://bioinformatics.org/mailman/listinfo/bioclusters > > >=20 >=20 > ------------------------------ >=20 > Message: 6 > Date: Wed, 10 Aug 2005 14:57:25 -0400 > From: "Nnabugwu, Ike (NIH/NIAMS)" <nnabugwi at mail.nih.gov> > Subject: [Bioclusters] Xserve Cluster setup > To: bioclusters at bioinformatics.org > Message-ID: > =09<4B9024D294BBEF45A18A1A360E22B24202877AC8 at NIHCESMLBX.nih.gov> > Content-Type: text/plain; charset=3D"us-ascii" >=20 > I have a head node running 10.3.9 and six cluster nodes that I am working= on > setting up. To have the head node and cluster communicate in the private > network, I have created /etc/hosts with entries i.e. 10.0.0.1 node01 etc, > and have enabled dhcp. But I do not know how to setup dns to use external > dns.Any pointer is appreciated. >=20 > -------------- next part -------------- > An HTML attachment was scrubbed... > URL: http://bioinformatics.org/pipermail/bioclusters/attachments/20050810= /8a298f18/attachment-0001.htm >=20 > ------------------------------ >=20 > Message: 7 > Date: Wed, 10 Aug 2005 15:00:48 -0400 > From: Chris Dagdigian <dag at sonsorol.org> > Subject: Re: [Bioclusters] Xserve Cluster setup > To: "Clustering,=09compute farming & distributed computing in life > =09science informatics"=09<bioclusters at bioinformatics.org> > Message-ID: <42FA4EE0.2090109 at sonsorol.org> > Content-Type: text/plain; charset=3Dus-ascii; format=3Dflowed >=20 >=20 > Many of the Apple programs and services will honor NetInfo over=20 > /etc/services. The same thing goes for DNS stuff like /etc/resolv.conf=20 > so you really need to read up on how OS X handles network services,=20 > otherwise you'll end up in a odd greyzone where you are letting NetInfo= =20 > handle some things and the standard unix-ish /etc/ files handle other=20 > things. Not good... >=20 > My best advice is this, go to this URL: > http://www.apple.com/server/documentation/ >=20 > ... the docs there will be helpful but the best one is the one on "OS X= =20 > Command Line Administration". That PDF will explicitly cover DNS=20 > start/stop but you may need one of the other guides to explain how to=20 > configure DNS in the first place. >=20 > Much depends on if you are doing this via the GUI or the command-line.=20 > There are nice GUI tools for adding external DNS servers to your=20 > configuraiton. The command line methods exist but are a bit more cryptic. >=20 > Regards, > Chris >=20 >=20 >=20 >=20 >=20 > Nnabugwu, Ike (NIH/NIAMS) wrote: > > I have a head node running 10.3.9 and six cluster nodes that I am worki= ng on > > setting up. To have the head node and cluster communicate in the privat= e > > network, I have created /etc/hosts with entries i.e. 10.0.0.1 node01 et= c, > > and have enabled dhcp. But I do not know how to setup dns to use extern= al > > dns.Any pointer is appreciated. > >=20 >=20 >=20 > --=20 > Chris Dagdigian, <dag at sonsorol.org> > Independent life science IT & informatics consulting > Office: 617-666-6454, Mobile: 617-877-5498, Fax: 425-699-0193 > PGP KeyID: 83D4310E Yahoo IM: craffi Web: http://bioteam.net >=20 >=20 > ------------------------------ >=20 > Message: 8 > Date: Thu, 11 Aug 2005 09:51:37 +0200 > From: Richard Wonka <richard.wonka at web.de> > Subject: Re: [Bioclusters] re: software skills course > To: bioclusters at bioinformatics.org > Message-ID: <888655856 at web.de> > Content-Type: text/plain; charset=3Diso-8859-1 >=20 >=20 > Hey List :-) >=20 > AOL! > I'm administrator with a light biological background and have got my prim= er in python. > Me and my colleagues (some of them bioscientists) would like see what thi= s is like. >=20 > Great! >=20 > Richard >=20 > > [...] > > I'm working with support from the Python Software Foundation to develop > > an open source course on basic software development skills for people > > with backgrounds in science and engineering. I have a beta version of > > the course notes ready for review, and would like to pull in people > > in sci&eng to look it over and give me feedback. If you know anyone > > who fits this bill (particularly people who might be interested in > > following along with a trial run of the course this fall), I'd be > > grateful for pointers. > > [...] > _________________________________________________________________________ > Mit der Gruppen-SMS von WEB.DE FreeMail k=F6nnen Sie eine SMS an alle=20 > Freunde gleichzeitig schicken: http://freemail.web.de/features/?mc=3D0211= 79 >=20 >=20 >=20 >=20 >=20 > ------------------------------ >=20 > _______________________________________________ > Bioclusters maillist - Bioclusters at bioinformatics.org > https://bioinformatics.org/mailman/listinfo/bioclusters >=20 >=20 > End of Bioclusters Digest, Vol 10, Issue 6 > ****************************************** >=20