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  • Select the program of choice.
  • Paste your query in the query box. Click Submit button to pass on the query with default options. Please note that some programs might have some options/parameters that are required. Also note that SeWeR doesn't check whether the required option(s)/parameter(s) is supplied or not. See program description for details.
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Copyright © 2000, 2003, 2004 Malay Kumar Basu
Send your comments/suggestions/bug-report to me:
malay@bioinformatics.org
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Program Name

readseq

Output format

Return data Download to file View in browser

Change sequence case to No change lower UPPER

Remove gap symbols

Calculate checksum of sequences

Select all, or sequences by number:

Translate bases (list as from-base:to-base pairs)


Features selection

Features to select/remove:

No selection

Extract sequence of selected features

Remove sequence of selected features

Subrange of sequence feature locations to extract
(e.g., -1000..0 is 1000 bases upstream to start of feature; end..end+100 is from end to 100 bases downstream. These selections apply only when input data includes parsed feature tables.)

cap

Overlap Length Cutoff (>20)

Overlap Percent Identity Cutoff (>65)

View assembly results Interactively by email:

Readseq
At IUBIO. ReadSeq is written by Don Gilbert. It automatically recognizes the input sequence type and convert it into a format of choice. Input type-DNA/protein sequence(s)of different formats. Required option-output format.
CAP
Contig assembly program (CAP). Input type-DNA sequences in FASTA format. Required option-none.

TOOLS

Clean/Inverse Complement