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changelog [2016/04/13 18:02] (current)
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 +===== Version History =====
 +==== 1.1.0 ====
 +=== Major new features ===
 + *  Reimplemented ''​gdata''​ infrastructure. **All users should update to this version because it is no longer compatible with previous gdata format**. The data release have also been updated.
 + *  More association tests included: a partial list of [[https://​github.com/​zhanxw/​rvtests|''​rvtests''​]] and a ''​QuickRegression''​ routine.
 + *  Development moved to github.com to take advantage of its "​issue"​ tracker system for interaction with users.
 +
 +<box 80% round blue|**__Note__**>​
 + ​Binary releases of ''​SEQPower''​ is no longer provided. Instead we release Docker images that supports all platforms where the Docker program is available.
 +</​box>​
 +==== 1.0.1 ====
 +Fix a critical regression bug that makes ''​%%--%%proportion_detrimental''​ crippled under default setting of ''​%%--%%def_disruptive''​
 +
 +<box 80% round blue|**__Note__**>​
 + ''​SEQPower''​ does not provide "​lite"​ version now -- ''​spower simulate''​ will be available by default.
 +</​box>​
 +==== 1.0.0 ====
 +=== Major new features ===
 + *  Update default parameters to implement the European demographic model recently published [Gazave et al (2013)] for ''​spower simulate''​
 + *  Add ''​%%--%%replicate -1''​ option to allow for calculating average power/​sample size estimates over the entire input data file
 + *  Add ''​%%--%%missing_unlisted''​ option to include a list of variants that mimics the exome chip design
 +
 +=== Minor new features ===
 + *  Implement the truncated selection coefficient distribution (Kyrukov et al 2009) model. See updated ''​spower simulate -h''​
 + *  Color optimization for plots
 +
 +==== 1.0rc1 ====
 +=== Major new features ===
 + *  Command interface change, with improved naming convention for phenotype models
 + *  Significant improvement on storage data format for haplotype pools
 + *  Add ''​spower simulate''​ command. Now SEQPower has two versions: "​Lite"​ (without this command) and "​Full"​ (with this command).
 + *  Add ''​spower execute %%--%%plot''​ command
 + *  ''​spower show''​ is now compatible with SEQPower database input file
 +
 +=== Minor new features ===
 + *  Improved format for ''​spower show''​ output result
 + *  Change output for ''​GroupWrite''​ to haplotypes; the minor allele count genotype output is still available with an additional switch ''​%%--%%recode''​ on
 + *  Add ''​%%--%%limit''​ switch to restrict calculation to specified number of association units
 + *  Add more simulated data set. Users need to completely update all haplotype pools data as the binary data format with release 1.0 beta are no longer supported
 + *  Improved installation package for MacOSX
 +
 +=== Maintenance ===
 +Various minor bug fixes
 +
 +==== 1.0beta ====
 +First public release of SEQPower