pl.krakow.cmuj.bioinformatics.jellipse
Class AbsDeviation

java.lang.Object
  pl.krakow.cmuj.bioinformatics.jellipse.AbsDeviation

All Implemented Interfaces:

Plottable

 class AbsDeviation
extends java.lang.Object
implements Plottable

Enables plotting the absolute value of the difference between the Ln of the radius of curvature of the current structure (observable) and the value of the parameter obtained analyzing model peptides. Absoulte deviation is computed along the whole polypeptide chain.

Constructor Summary

AbsDeviation()

Method Summary

float	getMaxValue(Peptide ch)
float	getMinValue(Peptide ch)
float	getValue(Aminoacid aacid)
boolean	isCorrect(float value)
java.lang.String	toShortString()
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

AbsDeviation

AbsDeviation()

Method Detail

getValue

public float getValue(Aminoacid aacid)

Specified by:

getValue in interface Plottable

Parameters:

aacid - aminoacid in the region of which the absolute deviation is to be returned

Returns:

absoulte value of the deviation of observable and theoretical Ln of the radius of local curvature

getMinValue

public float getMinValue(Peptide ch)

Specified by:

getMinValue in interface Plottable

Parameters:

ch - chain for which the minimal value of absolute deviation is to be returned

Returns:

minimal numerical value of absoulte deviation between the Ln of the radius of curvature of the current structure (observable) and the value of the parameter obtained analyzing model peptides.

getMaxValue

public float getMaxValue(Peptide ch)

Specified by:

getMaxValue in interface Plottable

Parameters:

ch - chain for which the maximal value of absolute deviation is to be returned

Returns:

maximal numerical value of absoulte deviation between the Ln of the radius of curvature of the current structure (observable) and the value of the parameter obtained analyzing model peptides.

isCorrect

public boolean isCorrect(float value)

Specified by:

isCorrect in interface Plottable

Parameters:

value - value of the absoulte deviation between the Ln of the radius of curvature of the current structure (observable) and the value of the parameter obtained analyzing model peptides - to be tested whether id correct

Returns:

true, iff the tested value is correct for as for the property of absoulte deviation of Ln(R)

toString

public java.lang.String toString()

Specified by:

toString in interface Plottable

Overrides:

toString in class java.lang.Object

Returns:

text identyfing property

toShortString

public java.lang.String toShortString()

Specified by:

toShortString in interface Plottable

Returns:

short text identyfing property