pl.krakow.cmuj.bioinformatics.jellipse
Interface Plottable

All Known Implementing Classes:

AbsDeviation, AvgDihedralAngle, Deviation, LnCurvature

public interface Plottable

Common functions for all properties that can be represented in a 2D plot.

Method Summary

float	getMaxValue(Peptide ch)
float	getMinValue(Peptide ch)
float	getValue(Aminoacid aacid)
boolean	isCorrect(float value)
java.lang.String	toShortString()
java.lang.String	toString()

Method Detail

getValue

float getValue(Aminoacid aacid)

Parameters:

aacid - current aminoacid considered as a vector of property

Returns:

numerical value of property

getMinValue

float getMinValue(Peptide ch)

Parameters:

ch - current chain that has the property assigned for its elements

Returns:

minimal numerical value of property in the whole chain

getMaxValue

float getMaxValue(Peptide ch)

Parameters:

ch - current chain that has the property assigned for its elements

Returns:

miaxmial numerical value of property in the whole chain

isCorrect

boolean isCorrect(float value)

Parameters:

value - value to be tested for correctness

Returns:

true iff value is correct (e.g within reasonable range)

toString

java.lang.String toString()

Overrides:

toString in class java.lang.Object

Returns:

text identyfing property

toShortString

java.lang.String toShortString()

Returns:

short text identyfing property