Jmol._Canvas2D (Jmol) "jmolApplet0"[x]
loadScript jsmol/j2s/core/package.js
loadScript jsmol/j2s/core/corejmol.z.js
loadScript jsmol/j2s/core/corescript.z.js
JSmol exec jmolApplet0 start applet null
Jmol JavaScript applet jmolApplet0__4970710032762904__ initializing
Jmol getValue debug null
Jmol getValue logLevel null
Jmol getValue allowjavascript null
AppletRegistry.checkIn(jmolApplet0__4970710032762904__)
CIR resolver set to https://cactus.nci.nih.gov/chemical/structure
vwrOptions:
{ "name":"jmolApplet0","applet":true,"documentBase":"https://bioinformatics.org/firstglance/fgij3.7/fg.htm?mol=6qj4","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__4970710032762904__","pickCallback":"jmolPickCallback","codePath":"https://bioinformatics.org/firstglance/fgij3.7/jsmol/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","loadStructCallback":"jmolLoadStructCallback","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"4970710032762904","resizeCallback":"jmolResizeCallback","messageCallback":"jmolMessageCallback","bgcolor":"#ffd0d0" }
setting document base to "https://bioinformatics.org/firstglance/fgij3.7/fg.htm?mol=6qj4"
(C) 2015 Jmol Development
Jmol Version: 14.31.51 2021-08-12 10:23
java.vendor: Java2Script (HTML5)
java.version: 2021-05-26 21:16:02 (JSmol/j2s)
os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)
Access: ALL
memory: 0.0/0.0
processors available: 1
useCommandThread: false
appletId:jmolApplet0 (signed)
Jmol getValue emulate null
defaults = "Jmol"
Jmol getValue boxbgcolor null
Jmol getValue bgcolor #ffd0d0
backgroundColor = "#ffd0d0"
Jmol getValue ANIMFRAMECallback null
Jmol getValue APPLETREADYCallback Jmol._readyCallback
APPLETREADYCallback = "Jmol._readyCallback"
StatusManager callback set for APPLETREADYCallback f=Jmol._readyCallback cb=APPLETREADY
Jmol getValue ATOMMOVEDCallback null
Jmol getValue AUDIOCallback null
Jmol getValue CLICKCallback null
Jmol getValue DRAGDROPCallback null
Jmol getValue ECHOCallback null
Jmol getValue ERRORCallback null
Jmol getValue EVALCallback null
Jmol getValue HOVERCallback null
Jmol getValue IMAGECallback null
Jmol getValue LOADSTRUCTCallback jmolLoadStructCallback
LOADSTRUCTCallback = "jmolLoadStructCallback"
StatusManager callback set for LOADSTRUCTCallback f=jmolLoadStructCallback cb=LOADSTRUCT
Jmol getValue MEASURECallback null
Jmol getValue MESSAGECallback jmolMessageCallback
MESSAGECallback = "jmolMessageCallback"
StatusManager callback set for MESSAGECallback f=jmolMessageCallback cb=MESSAGE
Jmol getValue MINIMIZATIONCallback null
Jmol getValue SERVICECallback null
Jmol getValue PICKCallback jmolPickCallback
PICKCallback = "jmolPickCallback"
StatusManager callback set for PICKCallback f=jmolPickCallback cb=PICK
Jmol getValue RESIZECallback jmolResizeCallback
RESIZECallback = "jmolResizeCallback"
StatusManager callback set for RESIZECallback f=jmolResizeCallback cb=RESIZE
Jmol getValue SCRIPTCallback null
Jmol getValue SYNCCallback null
Jmol getValue STRUCTUREMODIFIEDCallback null
Jmol getValue doTranslate null
language=en_US
Jmol getValue doTranslate null
Note -- Presence of message callback disables disable translation; to enable message translation use jmolSetTranslation(true) prior to jmolApplet()
Note -- language translation disabled
Jmol getValue popupMenu null
Jmol getValue script null
Jmol getValue loadInline null
Jmol getValue load null
Jmol applet jmolApplet0__4970710032762904__ ready
loadScript jsmol/j2s/JM/BioResolver.js
loadScript jsmol/j2s/JM/AlphaMonomer.js
loadScript jsmol/j2s/JM/Monomer.js
loadScript jsmol/j2s/JM/ProteinStructure.js
loadScript jsmol/j2s/JM/Helix.js
loadScript jsmol/j2s/JM/Sheet.js
loadScript jsmol/j2s/JM/AminoPolymer.js
loadScript jsmol/j2s/JM/AlphaPolymer.js
loadScript jsmol/j2s/JM/BioPolymer.js
loadScript jsmol/j2s/JM/Turn.js
loadScript jsmol/j2s/JM/AminoMonomer.js
loadScript jsmol/j2s/core/corebio.z.js
script 1 started
FileManager.getAtomSetCollectionFromFile(https://bioinformatics.org/firstglance/fgij3.7/localPDBFiles/1atom.pdb)
FileManager opening url https://bioinformatics.org/firstglance/fgij3.7/localPDBFiles/1atom.pdb
The Resolver thinks Pdb
Time for openFile(https://bioinformatics.org/firstglance/fgij3.7/localPDBFiles/1atom.pdb): 360 ms
reading 1 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Babel
1 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
Time for creating model: 6 ms
zoomLarge = false
loadScript jsmol/j2s/core/coretext.z.js
JSmol loading completed.
Now loading and|characterizing the molecule ...
FileManager.getAtomSetCollectionFromFile(https://files.rcsb.org/download/6QJ4.pdb)
FileManager opening url https://files.rcsb.org/download/6QJ4.pdb
The Resolver thinks Pdb
CELL CYCLE 22-JAN-19 6QJ4
CRYSTAL STRUCTURE OF THE C. THERMOPHILUM CONDENSIN YCS4-BRN1
SUBCOMPLEX BOUND TO THE SMC4 ATPASE HEAD IN COMPLEX WITH THE
TERMINAL DOMAIN OF BRN1
found biomolecule 1: A, B, C, D, E
biomolecule 1: number of transforms: 1
Setting space group name to P 1 21 1
6QJ4
Time for openFile(https://files.rcsb.org/download/6QJ4.pdb): 668 ms
reading 10778 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Jmol
10778 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
Time for creating model: 231 ms
CELL CYCLE 22-JAN-19 6QJ4
CRYSTAL STRUCTURE OF THE C. THERMOPHILUM CONDENSIN YCS4-BRN1
SUBCOMPLEX BOUND TO THE SMC4 ATPASE HEAD IN COMPLEX WITH THE
TERMINAL DOMAIN OF BRN1
found biomolecule 1: A, B, C, D, E
6QJ4
spinY = 5
spinFPS = 10.0
hoverDelay = 0.3
loadScript jsmol/j2s/core/corescriptmath.z.js
loadScript jsmol/j2s/java/util/HashMap.js
loadScript jsmol/j2s/J/bspt/PointIterator.js
