BIRCH/Winbirch/Binaries/Status
From Bioinformatics.Org Wiki
Building Binaries Status Table For Windows XP 32-bit
| Package | How to build? | libs | bins | Installed? | Tested? | Comments |
| FASTA3 | FASTA3 Build Page | ntdll.dll kernel32.dll msvcrt.dll |
fasta36.exe fastf36.exe fastm36.exe fasts36.exe fastx36.exe fasty36.exe glsearch36.exe lalign36.exe lav2ps.exe lav2svg.exe map_db.exe ssearch36.exe tfastf36.exe tfastm36.exe tfasts36.exe tfastx36.exe tfasty36.exe |
yes | yes | |
| PHYLIP | PHYLIP Build Page | ntdll.dll kernel32.dll msvcrt.dll GDI32.dll USER32.dll |
clique.exe consense.exe contml.exe contrast.exe dnacomp.exe dnadist.exe dnainvar.exe dnaml.exe dnamlk.exe dnamove.exe dnapars.exe dnapenny.exe dollop.exe dolmove.exe dolpenny.exe factor.exe fitch.exe gendist.exe kitsch.exe mix.exe move.exe neighbor.exe pars.exe penny.exe proml.exe promlk.exe protdist.exe protpars.exe restdist.exe restml.exe retree.exe seqboot.exe treedist.exe drawtree.exe drawgram.exe |
yes | yes |
|
| NCBI: BLAST+ | BLAST+ Build Page | ntdll.dll kernel32.dll msvcrt.dll dbghelp.dll VERSION.dll ADVAPI32.dll RPCRT4.dll Secur32.dll WS2_32.dll WS2HELP.dll |
blastdbcheck.exe blastdbcmd.exe blastdb_aliastool.exe blastn.exe blastp.exe blastx.exe blast_formatter.exe convert2blastmask.exe dustmasker.exe makeblastdb.exe makembindex.exe psiblast.exe rpsblast.exe pstblastn.exe segmasker.exe tblastn.exe tblastx.exe windowmasker.exe |
yes | yes | |
| NCBI: Sequin | Sequin Build Page | ntdll.dll kernel32.dll WS2_32.dll ADVAPI32.dll RPCRT4.dll Secur32.dll msvcrt.dll WS2HELP.dll USER32.dll GDI32.dll COMDLG32.dll COMCTL32.dll SHELL32.dll SHLWAPI.dll |
sequin.exe | yes | yes | |
| NCBI: Cn3D | Cn3D Build Page | ADVAPI32.dll COMCTL32.dll comdlg32.dll DCIMAN32.dll DDRAW.dll GDI32.dll GLU32.dll kernel32.dll msvcrt.dll ntdll.dll ole32.dll OPENGL32.dll RPCRT4.dll Secur32.dll SHELL32.dll SHLWAPI.dll USER32.dll WS2_32.dll WS2HELP.dll |
Cn3D.exe | yes | yes | |
| TCOFFEE | TCOFFEE Build Page | no | Installation looks tricky. I tried its existing installation perl file - with minor modifications - through mingw. It doesn't get installed. The package developers recommend to install a Linux virtual machine on windows and install T-Coffee in the Linux virtual machine. But this solution is not reasonable for our case. The installation perl program does all the requirements for installation, from compiling the source, to compiling and installing some perl modules, to downloading, compiling, and installing all the other softwares it needs. There is not even a correct makefile to compile the sources regardless of installing perl modules. There are EXE files for older versions, but all need to cygwin1.dll. |
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| DIALIGN-TX | DIALIGN-TX Build Page | ntdll.dll kernel32.dll msvcrt.dll |
dialigntx.exe | yes | yes | |
| Primer3 | Primer3 Build Page | ntdll.dll kernel32.dll msvcrt.dll |
long_seq_tm_test.exe ntdpal.exe ntthal.exe oligotm.exe primer3_core.exe |
yes | yes | |
| MrBayes | MrBayes Build Page | ntdll.dll kernel32.dll msvcrt.dll |
mb.exe | yes | yes | |
| XYLEM | XYLEM Build Page | no | ||||
| FSAP | FSAP Build Page | ntdll.dll kernel32.dll msvcrt.dll |
bachrest.exe d3hom.exe d4hom.exe funnel.exe gel.exe intrest.exe multidigest.exe numseq.exe p1hom.exe p2hom.exe prostat.exe testcode.exe |
yes | yes | |
| AceDB | AceDB Build Page | no | New releases are not for Windows, and the links to the older versions are dead. Old versions were for windows 95 and windows NT. |
