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  • Preliminary observations with mmCIF adoption.htm:FirstGlance in Jmol adoption.htm:to display specific molecules. Most simply link adoption.htm:Mirror Sites adoption.htm:1zir. conformations.htm: conformations.htm:explained in the Notes, conformations.htm:1zir, which uses 22 symbols to mark conformations.htm:3eoj (asymmetric unit), conformations.htm:5pog, first locations are marked A or E, conformations.htm:3pga, first locations are marked C, conformations.htm:1zir, conformations.htm:(" conformations.htm:5qye conformations.htm:3eoj conformations.htm:1zir conformations.htm:5pog conformations.htm:5qye conformations.htm:6ss1 asymmetric unit contacts-listing-example.htm:
    CONTACTS: NON-COVALENT (AND COVALENT) INTERACTIONS WITH TARGET:
      Chain A WITHIN 1HXW.
    Listing by FirstGlance in Jmol.

    DEFINITIONS by FirstGlance for Contacts & Non-Covalent Interactions.

    760 atoms make up the entire target.
    According to the checkboxes currently checked, 154 atoms are currently shown contacting the target.
    (If not all checkboxes are currently checked, some additional contacts may not be shown.)

    All non-covalent bonds listed below are putative.
    When all checkboxes are checked, the following numbers of contacting atoms are displayed:

    CategoryAtoms contacting targetFind..*Target atoms being contactedFind..*
    Hydrogen-bonded water†47 water oxygen atoms~cont_hbonds and water and oxygen59 target atoms contacting water~targ_to_water
    Water in water bridges‡10 water oxygen atoms~water_bridges and water and oxygen14 target atoms in water bridges~water_bridges and ~contarget
    Water bridged non-water12 non-water atoms~water_bridges and not (water or ~contarget)dittoditto
    Hydrogen-bonded non-water32 non-water atoms~cont_hbonds and not water30 target atoms~targ_hbonds
    Hydrophobic apolar van der Waals interactions64 contacting carbon or sulfur atoms~cont_hphob57 target carbon or sulfur atoms~targ_hphob
    Protein to protein salt bridges 7 contacting charged atoms~cont_sb6 target charged atoms~targ_sb
    Protein to protein salt bridges involving ends of chains§‡3 contacting charged atoms~cont_sb_ends2 target charged atoms~targ_sb_ends
    Protein to protein cation-pi interactions 7 contacting atoms~cont_catpi7 target atoms~targ_catpi
    Protein to protein cation-pi interactions involving ends of chains§‡ 7 contacting atoms~cont_catpi_nterm or ~cont_catpi_endrings7 target atoms~targ_catpi_nterm or ~targ_catpi_endrings
    Metal and miscellaneous interactions 0 contacting atoms~cont_memi0 target atoms~targ_memi

    *These terms can be used in the Find.. dialog in the Focus box of FirstGlance to put halos on the corresponding atoms.
    †These design.htm: design.htm:Acknowledgements design.htm:Jmol beginning design.htm:with the hyperlink to FirstGlance. design.htm: design.htm:many unique capabilities absent from other design.htm:All About FirstGlance in Jmol. disopred.htm:FirstGlance in Jmol gallery.htm: gallery.htm:There is also a Snapshot Gallery. gallery.htm: gallery.htm:'dipeptide Ala-Pro. Four terminal charges.'); gallery.htm: '
    Some water. Contains an ' + gallery.htm: ' Has many ' + gallery.htm: 'No water. Contains an ' + gallery.htm:Exploring ConSurf Results gallery.htm: glycoproteinbonds.htm: FirstGlance in Jmol\n\ glycoproteinbonds.htm:Molecule Information Tab).\n\ glycoproteinbonds.htm:asymmetric unit of 8y3j:   \n\ glycoproteinbonds.htm:\n\ glycoproteinbonds.htm:9bvo. glycoproteinbonds.htm: glycoproteinbonds.htm:ConSurf glycoproteinbonds.htm:Another example: salt bridges. index-bak.htm: index-bak.htm:'(' index-bak.htm:' ' index-bak.htm:' ' index-bak.htm:' index-bak.htm: Animate molecular views for presentations easily! index-bak.htm:" + fgijVersion + " " + releaseDate + "" + index-bak.htm:' index-bak.htm:' index-bak.htm://' index-bak.htm://' index-bk2.htm: index-bk2.htm:dw('' index-bk2.htm:' ' index-bk2.htm:' ' index-bk2.htm:"" + fgijVersion + " " + releaseDate + "" + index-bk2.htm:' index-bk2.htm:' index-bk2.htm:' index-bk2.htm://' index-bk2.htm://' index-bk2.htm:' index-bk2.htm: index-bk2.htm: Animate molecular views for presentations easily! index-bk2.htm: index.htm: index.htm:'' index.htm:' index.htm:' ' index.htm:Mirrors. index.htm:"" + fgijVersion + " " + releaseDate + "" + index.htm:' index.htm:' index.htm:' index.htm://' index.htm://' index.htm:' index.htm: index.htm: Animate molecular views for presentations easily! index.htm:links. install.htm:FirstGlance (see license). install.htm:FirstGlance in Jmol Mirror Sites. install.htm:
  • Familiarize yourself with the Decide which links.htm:
  • links.htm:
  • links.htm:<a href="http://firstglance.jmol.org/fg.htm?mol=1d66" links.htm:PDB Data File Access Methods Employed by links.htm:FirstGlance Mirror Site, links.htm:backbone atoms only. The "=1" links.htm:Molecule Information Tab) links.htm:simplified models: links.htm:Molecule Information Tab, links.htm: links.htm:<a href="http://firstglance.jmol.org/fg.htm?mol=1sva&au=1" links.htm:versions.htm. mirrors.htm:Links. mirrors.htm:
  • Use a different, " + nochromejava.htm:"
  • Explore " notes.htm:FirstGlance in Jmol notes.htm:Save images, rocking/spinning animations notes.htm:videos of complex/manual operations. notes.htm:All notes.htm:Amphibian notes.htm:Human notes.htm:Pectate lyase B. notes.htm:7bbv and see notes.htm:Synthetic constructs. notes.htm:7rce. notes.htm:tRNA deaminase. notes.htm:8aw3. notes.htm:Hemoglobin of loggerhead notes.htm:query parameters: notes.htm:&au=1 to the end of the URL. notes.htm:Molecule Information Tab tells you how many notes.htm:Molecule Information Tab. notes.htm:Molecule Information Tab. notes.htm:&bbonly=N. All alpha carbons will be loaded notes.htm:uploading them to FirstGlance. notes.htm:uploaded notes.htm:Molecule Information Tab to get Biological notes.htm:1foe-opm.pdb). notes.htm:(example: 1r3j-opm.pdb). notes.htm:(example: 1foe-opm.pdb). notes.htm:(example: 4fix-opm.pdb.gz). notes.htm:predicted notes.htm:abcd, notes.htm: 0abc, notes.htm: 1abcd, notes.htm: 1a@b: notes.htm:
  • 1abc Entry does not exist: notes.htm:
  • 2cx2 WDRN, withdrawn by its depositors notes.htm:
  • 1vsz OBS, obsolete and superseded. notes.htm:5np6 (huge), notes.htm:8rox (5-character ligand ID): notes.htm:
  • RoseTTaFold-W9JUFF.pdb notes.htm:RoseTTaFold-W9JUF2.pdb. notes.htm:
  • 3j3y HIV capsid, available only in mmCIF format. notes.htm:
  • 1ijw.cif mmCIF requested, despite notes.htm:
  • M24L48-single-polyhedron.pdb. notes.htm:Molecule Information Tab will state that notes.htm:M24L48-single-polyhedron.pdb. notes.htm:Focus Box): notes.htm:6hww notes.htm:Unsimplified 5x50 notes.htm:
  • 5x9z notes.htm:
  • 2ace, notes.htm:(Focus Box) notes.htm:
  • Density map methods used by FirstGlance/JSmol notes.htm:1lzr notes.htm:1w08 notes.htm:4gcf notes.htm:1f8v notes.htm:1lyz notes.htm:7dy0 notes.htm:7nca notes.htm:1ucu notes.htm:Molecule Information Tab, you are offered notes.htm:Molecule Information Tab. notes.htm:Molecule Information Tab, you are offered notes.htm:Upload your renumbered PDB file to notes.htm:FirstGlance. notes.htm: notes.htm: notes.htm:1KPL AU: 4 chains (1 sequence), 1 BU: 2 chains. notes.htm:
  • 4b14 AU: 3 chains, 3 BU 1 chain each. notes.htm:
  • 2vxj AU: 24 chains, 24 BU all monomers. notes.htm:
  • 2zzs AU: 32 chains, 32 BU notes.htm: 4dx9 notes.htm:
  • 6nca AU: 60 chains, 3 sequences, notes.htm:
  • 3m6y AU: 4 chains (1 sequence), notes.htm:
  • 1nek AU: 4 chains, 4 sequences, notes.htm:
  • 1zw0 AU: 8 chains (1 sequence), 15 BU: 2,2,2,2, notes.htm:
  • 2ds7 AU: 1 chain, 1 BU: 2 chains. notes.htm:
  • 1buu AU: 1 chain, 2 BU: 3, 3 chains, notes.htm:
  • 7mgp AU: 1 chain, 1 BU: 6 chains. notes.htm:
  • 1hho AU: 2 chains, 2 sequences, notes.htm:
  • 1sva AU: 6 chains, 1 sequence, 1 BU: 360 chains notes.htm:
  • 1ej6 AU: 5 chains, 3 sequences, notes.htm:
  • 6nef: 1 chain, 1 BU: 9 chains (filament). notes.htm:
  • 4uft: 2 chains, 2 sequences notes.htm:
  • 6f2s: 22 chains, 5 sequences notes.htm:
  • 2hhd AU: 4 chains, 1 BU: 4 chains. notes.htm:
  • 4a53 NMR. REMARK 350 (which notes.htm:
  • 5vln NMR. REMARK 350 is present, notes.htm:
  • 4by9 AU: 18 chains, 5 sequences, notes.htm:
  • 6rd4 AU: 31 chains, 18 sequences, notes.htm:
  • 7o3e has 31 chains with 23 distinct notes.htm:
  • Query Parameter "bu=" notes.htm:
  • 1zw0: &bu=5 (Biological Unit 5) notes.htm:
  • 1hho: &bu=2 (Biological Unit 2) notes.htm:1ej6 notes.htm:3iyv. notes.htm:Reovirus Core 1ej6. notes.htm:1ej6 notes.htm:3iyv notes.htm:1aym notes.htm:2GTL notes.htm:1a34 notes.htm:6rd4 notes.htm:2hhd notes.htm:3iyv, notes.htm:an animation. notes.htm:empty baskets notes.htm:query parameters. notes.htm:query parameters. notes.htm:5x9z is a single protein chain of 2,217 amino notes.htm:6quk notes.htm:4xbf notes.htm:
  • 4aoj notes.htm:
  • 6cri notes.htm:
  • 3j36 notes.htm:
  • 1hqk notes.htm:
  • 6hkt notes.htm:
  • 4ioa notes.htm:query parameter &nosimp.) notes.htm:1a34 notes.htm:7o3x notes.htm:2gtl notes.htm:(query parameter &nosimp) notes.htm:1aym notes.htm:3iyv notes.htm:1ej6 notes.htm:6q5u: 2.28 million atoms. notes.htm:7vrn: 2.48 million atoms. notes.htm:1wce notes.htm:8w9p: 4.58 million atoms. notes.htm:5zvt notes.htm:1m4x notes.htm:(3iyv) notes.htm:1aym rhinovirus capsid: notes.htm:3iyv clathrin cage: notes.htm:query parameter &bbonly=N. For example, notes.htm:query parameters. notes.htm:
  • 1hho: notes.htm:
  • 1i8L: notes.htm:
  • ‡ 7mgp: notes.htm:
  • † 3Lo3: notes.htm:
  • ‡ 6nef: notes.htm:
  • ‡ 4aoj: notes.htm:empty baskets. notes.htm:
  • ‡ 2gtl: notes.htm:empty baskets. notes.htm:Enzyme 1e8f notes.htm:Oblate phage Qβ particle notes.htm:Eukaryotic vault 6bp8 notes.htm:
  • Bacteriophage HK97 notes.htm:Eastern Equine Encephalitis notes.htm:query parameter &bbonly=1 can be used. notes.htm:Human papilloma virus 16 capsid notes.htm: notes.htm:
  • 1qo1 protein only (ATP synthase motor, X-ray, notes.htm:
  • 1qzb RNA only (tRNA, EM, 9 Å) notes.htm:
  • 1bdx protein and DNA notes.htm:
  • 6zig protein only (bacteriophage baseplate, notes.htm:
  • 2rcj protein only (IgM pentamer, notes.htm:
  • Simplified Biological Unit 1 of 3iyv notes.htm:
  • Asymmetric unit of 3iyv, notes.htm:
  • 3zvs protein and ligands. notes.htm:
  • 1a1d protein only by NMR (RNA polymerase notes.htm:
  • Asymmetric unit of 3j3p, notes.htm:Simplified Biological Unit 1 of 3j3p notes.htm:
  • 1mj1, Protein and RNA notes.htm:
  • 1LBG, Protein and DNA (lac repressor bound notes.htm:
  • Unsimplified 4ioa, Protein and RNA notes.htm:
  • 486d, RNA notes.htm:2ACE notes.htm:Specifications have been developed. notes.htm:4ffL, notes.htm:4reo) notes.htm:2cyh, notes.htm:1dpp, notes.htm:8g82) notes.htm:4q1L - Find "polymerLength=3"). notes.htm:Molecule Information Tab. notes.htm:Focus Box, notes.htm:Button Box. notes.htm:Focus Box) by entering notes.htm:1D66, notes.htm:2HHD, notes.htm:1IGT, notes.htm:1APM. notes.htm:1JSA. Jmol notes.htm:(see bugs in Jmol). notes.htm:[More..] notes.htm:4CPA, notes.htm:1BKX. notes.htm:Focus Box with these terms: notes.htm:Focus Box). notes.htm:(see bugs in Jmol). This can cause notes.htm:2SOC. notes.htm: notes.htm:1jyn, notes.htm:1igt, notes.htm:7bbv, notes.htm:3t5o, notes.htm:6rhe, notes.htm:7wv3, EM 2.3 notes.htm:9bvo, EM 4.4 notes.htm:8xy9, X-ray 3.6 notes.htm:2kqo, NMR notes.htm:1c58, X-ray 1.0 notes.htm:148L, X-ray 1.9 notes.htm:1a0t, X-ray 2.4 notes.htm:1a78, X-ray 2.0 notes.htm:3gzt, EM 3.8 notes.htm:8y3j, EM, 3.2 notes.htm:8yvy, EM 3.0 notes.htm:5t01, X-ray 1.9 notes.htm:6bhj, X-ray 2.8 notes.htm:3agv, X-ray 2.2 notes.htm:3kle, X-ray 3.2 notes.htm:6bhj, X-ray 2.8 notes.htm:6yrb, X-ray 2.3 notes.htm:1f8b, X-ray 1.8 notes.htm:6evv, X-ray 2.5 notes.htm:176d, NMR notes.htm:1m06, X-ray 3.5 notes.htm:7LKC, X-ray 1.0 notes.htm:7dc4, X-ray 1.0 notes.htm:8g82, X-ray 1.2 notes.htm:1ao2, NMR notes.htm:2kvj, NMR notes.htm:3c1p, X-ray 1.0 notes.htm:2LSC, NMR notes.htm:1bp8, NMR notes.htm:Molecule Information Tab notes.htm:1k28 (selenomethionine) notes.htm:1bkx (phosphoserine, phosphothreonine) notes.htm:8g82 (many non-standard amino acids) notes.htm:5e5t (and see notes.htm:1evv notes.htm:Introduction notes.htm:1i9v. Find T and RNA. notes.htm:GTP in 1qln. notes.htm:6cnu (small), notes.htm:5e5t (larger), notes.htm:2q33 (100% of non-Gly amino acids are D). notes.htm:Version 3.0, FirstGlance handles D-amino acids notes.htm:as unusual components. notes.htm:5e5t. notes.htm:6n7r. notes.htm:1EVV notes.htm:1H3O, notes.htm:1BKX. notes.htm:1B07. notes.htm:1apm, notes.htm:310D. notes.htm:1apm.) notes.htm:1ucy has a standard arginine sidechain, notes.htm:1JSA. notes.htm:More.. notes.htm:Molecule Information Tab as an estimate of notes.htm:1QLN notes.htm:Unsimplified
    4ioa     notes.htm:Unsimplified
    1fka     notes.htm:Some alpha carbons only: Unsimplified 4ioa. notes.htm:All alpha carbons only: 1jgo. notes.htm:1QLN. notes.htm:1mj1. notes.htm:4bxf. notes.htm:Unsimplified 1fka: notes.htm:2soc. notes.htm:4en3. notes.htm:1uc5. notes.htm:1h3o, notes.htm:1usi. notes.htm:3hm6. notes.htm:1jgo notes.htm:6e1w notes.htm:Asymmetric
    Unit of
    1a34     notes.htm:DNA: 1ijw, notes.htm:1flo. notes.htm:1u6b, notes.htm:1ehz. notes.htm:104d, notes.htm:1hmh. notes.htm:6n7r. The N residues are modeled as A:U pairs in notes.htm:
  • 6d06 has 1 unknown RNA nucleotide N11 in chain C. notes.htm:
  • The asymmetric unit of 7Lph notes.htm:
  • The 2i82 notes.htm:
  • The asymmetric unit of 3dzi is modeled notes.htm:1g9s, notes.htm:1phw, notes.htm:8u0z. notes.htm:
  • 6kr6 has 1 unknown nucleic residue N5 in chain B notes.htm:
  • 7e9e has 2 unknown RNA notes.htm:
  • 6e1w has 2 unknown RNA nucleotides, N13-14. notes.htm:
  • 7oqe has 53 unknown nucleic residues [N] in chain I notes.htm:
  • 1dv4 has all 361 nucleotides modeled notes.htm:
  • 1mj1: mixture of notes.htm:
  • Unsimplified 1fka: notes.htm:
  • 6d06 has 1 unknown RNA nucleotide N11 in chain C. notes.htm:
  • 6e1w has 2 unknown RNA nucleotides, N13-14. notes.htm:
  • 1fyk has 8 unknown DNA nucleotides notes.htm:
  • 7oqe has 53 unknown nucleic residues [N] in chain I notes.htm:
  • 1dv4 has all 361 nucleotides modeled notes.htm:
  • 6kr6 has 1 unknown nucleic residue N5 in chain B notes.htm:
  • 6e1w has 2 unknown RNA nucleotides, N13-14. notes.htm:
  • The asymmetric unit of 1s47 notes.htm:
  • 1mj1: mixture of notes.htm:
  • 1jgo: mixture of notes.htm:(DNA in 1d66, notes.htm:1ijw, notes.htm:1flo; notes.htm:RNA in 104d, notes.htm:1u6b), notes.htm:(DNA in 1l1m, notes.htm:1QLN; notes.htm:RNA in 1evv, notes.htm:1ehz; notes.htm:1hmh notes.htm:(DNA in 1flo; notes.htm:RNA in 1u6b). notes.htm:8uci, notes.htm:7v0w. notes.htm:6nje. notes.htm:1atp, notes.htm:7v0w. notes.htm:Molecule Information Tab. notes.htm:Focus Box), enter the terms listed under notes.htm:
  • 1BL8 notes.htm:
  • 1APM. notes.htm:showing notes.htm:
  • 1q29 notes.htm:
  • 1i9v notes.htm:Molecule Information Tab. notes.htm:
  • The asymmetric unit of 1s47 notes.htm:Molecule Information Tab. notes.htm:
  • The asymmetric unit of 1a34 has U11 notes.htm:Unsimplified 1fka notes.htm:486d notes.htm:1A1D (a single protein chain), notes.htm:1BDX (four protein chains notes.htm:1LBG (four protein chains, notes.htm:Molecule Information Tab of FirstGlance, notes.htm: 7UCR) notes.htm:2bbn. notes.htm:most sugars. notes.htm: 1K28) notes.htm:1ijw. notes.htm:
  • 5e01: notes.htm:
  • ‡ 1fhy: notes.htm:1nek: 4 chains, 1 sequence, in its notes.htm:
  • 1f02: notes.htm:
  • 1pma: notes.htm:
  • † 7o3e: notes.htm:
  • † 8qbm: notes.htm:
  • † ‡ 7txj: notes.htm:
  • ‡ 1f8v: notes.htm:
  • ‡ 1m06: notes.htm:
  • ‡ 5j37: notes.htm:
  • 1ucy: In biological unit 1 (BU1), notes.htm:
  • ‡ 7mgp: BU1 has notes.htm:
  • ‡ 8y3j: BU1 has 180 copies of each of notes.htm:
  • notes.htm:7wv3. notes.htm:
  • notes.htm:
  • fewer details mode, which notes.htm:7UCR, notes.htm:How FirstGlance Defines Conformations). notes.htm:Molecule Information Tab or in the notes.htm:Introduction. notes.htm:1ijw, which as 2 conformations for a single notes.htm:Molecule Information Tab: notes.htm:more details mode: notes.htm:2xi9. notes.htm:in the Sample Listing with Procedure. notes.htm:Focus Box, which is in any notes.htm:tab notes.htm:1ijw, notes.htm:Molecule Information Tab. notes.htm:1ijw notes.htm:Find.. to put halos on notes.htm:1jyn, a 4-chain protein tetramer with notes.htm://Technical Information. notes.htm:1D66 notes.htm:1yjo and notes.htm:1yjp notes.htm:In 1D66 (Gal4 bound notes.htm:
  • In 1BL8, the potassium notes.htm:
  • In 1LCD, numerous notes.htm:1D66 contact each other forming a small, buried, notes.htm:1D66. notes.htm:
  • The contacts to heme (HEM) in Example: Each chain in 2hhd notes.htm:1bl8, notes.htm:2xy9, notes.htm:1bl8, notes.htm:5j0z, notes.htm:6nie. notes.htm:7rin: notes.htm:Molecule Information Tab, and there, notes.htm:7ahl. notes.htm:7ahl, initially, notes.htm:2hhd, notes.htm:2v61. This example has only ~9,000 atoms, so it notes.htm:One end of peptide chain P in 2VAB contains notes.htm:
  • Each chain in the homotetramer 1BL8 has one cation-pi interaction notes.htm:interaction with chain A in 1B07. notes.htm:direction, between chains B and D in 1IGT. CaPTURE is unable to notes.htm:6b8t: notes.htm:Molecule Information Tab, and there, notes.htm:2HHD, or a heme group, or an notes.htm:1D66 reveals the cadmium-sulfur notes.htm:1BL8 reveals their notes.htm:1KF1 reveals their notes.htm:
  • 1IXJ includes DNA, notes.htm:1LCD notes.htm:Focus Box. notes.htm:1nme. notes.htm:
  • 1jpu. notes.htm:
  • 6zx4 has notes.htm:6nef notes.htm:6ef8 notes.htm:
  • Isopeptides: 3mrm. notes.htm:
  • His-Tyr: 4rea. notes.htm:4ga9 has Cys, Lys, Cys in close proximity. notes.htm:⊳ Example: 2xi9. notes.htm:2x9x notes.htm:2x9x_redone.pdb), notes.htm:2are (Gln1) and notes.htm:1s1a (PCA1). notes.htm:Example: 2xi9. notes.htm:6ef8. notes.htm:⊳ Example: 6e87 notes.htm:6nef notes.htm:6u4s notes.htm:4kwj notes.htm:2PNL. notes.htm:Ester crosslink example: 4mkm. notes.htm:⊳ Example: 1v54. notes.htm:1gge. notes.htm:Example: 6zx4. notes.htm:
  • 2xi9: isopeptides and thioesters. notes.htm:
  • 2yev: thioethers and His-Tyr. notes.htm:
  • 1nme: thioethers and Lys-Cys NOS notes.htm:9ins. notes.htm:9ins (resolution 1.7 Å), notes.htm:7s99, notes.htm:3hyd in FirstGlance. notes.htm:Show More Details notes.htm:Molecule Information Tab, click it. notes.htm:Molecule Information Tab. notes.htm:9ins (2 conformations, insulin) notes.htm:7rsa (2 conformations, RNAse) notes.htm:8paz (3 conformations, cupredoxin) notes.htm:8a3h (3 conformations, endoglucanase) notes.htm:1bsz (3 conformations, bacterial peptide deformylase) notes.htm:1dlf (3 conformations, antibody Fv) notes.htm:Asymmetric unit of 4nia. notes.htm: in 8a3h (endoglucanase). notes.htm: in 1fxo notes.htm: in 5pog notes.htm:
  • [USP]2101 (3 conformations) in 5qye notes.htm:
  • [GOL]200 (5 conformations) in 2qw7 notes.htm:Asymmetric unit of 4nia (see illustrations notes.htm:in 3dn1 notes.htm:1bxo (proteinase) has a notes.htm:Introduction, notes.htm:Molecule Information Tab, click Animate notes.htm:5sop: notes.htm:4NVK notes.htm:
  • 1ijw (Protein & DNA. A single notes.htm:
  • 7rin (Protein, 16% forked, notes.htm:
  • 6b8t (Protein, 17% forked, notes.htm:
  • 6o4f (Protein, 2% forked, notes.htm:
  • 5sop (Protein, 50% forked, notes.htm:
  • 5e1p (Protein, 76% forked, notes.htm:
  • 5i1r (Peptide. When animated, notes.htm:
  • 5qye (Protein, 5% forked, notes.htm:
  • 3b2c (Protein, 100% forked, notes.htm:
  • 4aoj (Protein. notes.htm:
  • 4nia (asymmetric unit) notes.htm:
  • 1zir (Crystallin. notes.htm:
  • 5pog (Protein. notes.htm:
  • 3eoj (asymmetric unit) (Bacteriochlorophyll. notes.htm:
  • 1cm4 (Protein. 100% of the alpha carbons have 4 notes.htm:Molecule Information Tab, and then notes.htm:
  • 3qba (DNA, 30% of phosphorus atoms forked, notes.htm:
  • 7ucr (RNA, 8% of phosphorus atoms forked, notes.htm:
  • 3kqu (Protein + DNA, notes.htm:
  • 1egw (Protein + DNA. All DNA phosphorus notes.htm:
  • 3cz3 (Protein + RNA. All RNA phosphorus notes.htm:
  • 3cye notes.htm:
  • 2gn2 notes.htm:
  • 1sy7 notes.htm:
  • 6DLQ notes.htm:Unusual Features. notes.htm:5sop (illustrated below), notes.htm:and 5sp6. notes.htm:focus box): notes.htm:5sop has 3 conformations. Above, notes.htm:7rin: The ligand TRS402 has alternate locations. notes.htm:(Focus box) after the contacts are displayed. notes.htm:
  • 6b8t: Targeting the ligand GOL302 notes.htm:
  • 7ucr: notes.htm:Molecule Information Tab, and there, notes.htm:simplified mode (fewer details). notes.htm:Show more details checks notes.htm:Molecule Information Tab. notes.htm:4ffL, notes.htm:4reo. notes.htm:Molecule Information Tab. notes.htm:4d2c, notes.htm:1dpp. notes.htm:2soc, notes.htm:1al4. notes.htm:1evv and notes.htm:1i9v. notes.htm:1g22. notes.htm:3htl. notes.htm:2xi9. notes.htm:6e87. notes.htm:4mkm. notes.htm:1v54. notes.htm:6ZX4. notes.htm:1kp0. notes.htm:7ucr. notes.htm:1kp0 (sidechain O/N on ASX, GLX), notes.htm:5g4a (unknown atoms), notes.htm:5wbn (unknown atoms). notes.htm:3hm6 (alpha helix of unknown sequence notes.htm:in polymer chain, 2i82; notes.htm:not in polymer, asymmetric unit of 3dzi. notes.htm:6eqq, notes.htm:1h3o, notes.htm:2fd8 notes.htm:Arg 475 chain A in 6rt4 notes.htm:4en3. notes.htm:1b07; notes.htm:1uc5. notes.htm:1aha. notes.htm:1bkx; notes.htm:1fmo. notes.htm:5gyz. notes.htm:5gz5. notes.htm:5udt. notes.htm:5udt. notes.htm:6b8b. notes.htm:6bLb. notes.htm:5g4a. notes.htm:5nd4. notes.htm:5kjx. notes.htm:5c8w. notes.htm:2ype. notes.htm:1igy. notes.htm:1d5t, notes.htm:4cpa, notes.htm:1h3o. notes.htm:2xi9. notes.htm:more details mode. notes.htm:1a1d, notes.htm:1bdx. notes.htm:empty baskets notes.htm:4o46. notes.htm: notes.htm:1hc0. notes.htm:Molecule Information Tab, notes.htm:1d66. notes.htm:"empty baskets". notes.htm:Molecule Information Tab. notes.htm:Example: 2ace. notes.htm:Molecule Information Tab, in notes.htm:"more details" mode only. notes.htm:Example: 1ijw. notes.htm:1ihu. notes.htm:in "more details" mode only, notes.htm:1bsz. notes.htm:3c1p; notes.htm:1evv. notes.htm:1H3O, notes.htm:1PRC notes.htm:1B07, notes.htm:1UC5. notes.htm:
  • 1GRH, in its original form, notes.htm:(See above for how these are now handled correctly.) notes.htm:2SOC. notes.htm:
  • 1AL4: notes.htm:The Version History gives numerous examples notes.htm:AlphaFold Colab and RoseTTAFold Predictions, notes.htm:Caveats notes.htm:Main Entrance to FirstGlance. notes.htm:Information about the notes.htm:Related PDB Files notes.htm:Sequence notes.htm:Sequence remarks by the authors notes.htm:Simplified/Fewer Details Mode: notes.htm:Status of a PDB code, testing, such as notes.htm:links to FirstGlance. options.htm:target="_blank">Jmol.org; and Getting PDB files options.htm:Behavior of CIF Files in FirstGlance. seqalign.htm:1d66). seqalign.htm:2hbs seqalign.htm:3gtv). seqalign.htm:FirstGlance in Jmol (FG) seqspecs.htm: slides.htm:different methods described separately, \n\ slides.htm:2xi9), or manual operations that you may \n\ slides.htm: slides.htm:Examples. slides.htm:At downloading your slides.htm: slides.htm:Examples. versions.htm: versions.htm://examples. versions.htm:Quick-Starts, versions.htm:ligands+ versions.htm:non-standard residues, versions.htm:
  • Alternative URLs versions.htm:Main Entrance. versions.htm: versions.htm:Molecule Information Tab versions.htm:1f8b (snapshot at right). versions.htm:Molecule Information Tab versions.htm:9bvo. Clicking the new option opens new versions.htm:Instructions. versions.htm:extensive set of PDB IDs versions.htm: versions.htm:1igt. versions.htm:Ligands+ versions.htm:(in the Button Box) versions.htm: versions.htm:8g82. versions.htm:new instructions about how versions.htm: versions.htm:Molecule Information Tab versions.htm:22 standard amino acids are absent, versions.htm:4bwm. versions.htm:7mgp. versions.htm:1pma. versions.htm: versions.htm:7TXJ. versions.htm: versions.htm:simplified, versions.htm:5j7v versions.htm:Molecule Information Tab versions.htm:7o3x. versions.htm:new section on UNK. versions.htm:unique capabilities versions.htm: versions.htm: versions.htm:Molecule Information Tab versions.htm:
  • 1pma: protein only, 28 chains. versions.htm:
  • 104d: DNA/RNA hybrids, 2 chains. versions.htm:
  • 5t01: protein + DNA, 4 chains. versions.htm:
  • 8qbm: protein + DNA + RNA, 29 chains. versions.htm:Molecule Information Tab, versions.htm:1igt. If you'd like us to add a simplified versions.htm:Molecule Information Tab, versions.htm:Examples. versions.htm:carbohydrates versions.htm:Molecule Information Tab, versions.htm:1f8b. versions.htm:1ijw, Hide.., Residue/Group TRS203. versions.htm:Molecule Information Tab versions.htm:1igt versions.htm:more examples. versions.htm:1f8b has more chains; versions.htm:1ucy has fewer chains. versions.htm:Examples, and versions.htm:more examples. versions.htm:Molecule Information Tab, versions.htm:Instructions versions.htm:3hm6 (click Show More Details) versions.htm:6e1w versions.htm:test cases has been tabulated, and the versions.htm:2GTL, versions.htm:Molecule Information Tab with links to versions.htm:1mhw (be sure to click "show more details"). versions.htm:1f8v. versions.htm: versions.htm:1ao4. Calcium ions, also designated "CA", versions.htm:148L, versions.htm:ConSurf-processed models, versions.htm:ConSurf-processed 1CLR. versions.htm:8g82. versions.htm:9ins. versions.htm:8g82. versions.htm:8kck, versions.htm:1a81. versions.htm:8q03 versions.htm:1a34, Views Solid, Composition, versions.htm:query parameter &nosimp forces versions.htm:6hkt simplified vs. versions.htm:6hkt NOT simplified. versions.htm:3gzt) versions.htm:104d. versions.htm:8g82. versions.htm:1qo1. versions.htm:1a1d. versions.htm:4xbf. versions.htm:ConSurf processed models, versions.htm:ConSurf processed models, versions.htm: versions.htm:ConSurf processed models, versions.htm: versions.htm:9ins, Find.. cys6 and sulfur, versions.htm: versions.htm:2bbn, versions.htm:Molecule Information tab. versions.htm:8jpy versions.htm:8w0q. versions.htm: versions.htm:1igt. versions.htm:Alternate Locations versions.htm:1HXW. versions.htm:ConSurf) versions.htm:(Focus Box) versions.htm: versions.htm: versions.htm:5sop. versions.htm:Additional examples. versions.htm:5sop: versions.htm:Singletons. versions.htm:all possible conformations. versions.htm:4NVK versions.htm:How to capture videos. versions.htm:Molecule Information tab. versions.htm:5sop. versions.htm:Molecule Information tab; otherwise, versions.htm:Molecule Information tab, at the bottom of the versions.htm:Focus Box), provided that you have already versions.htm:Molecule Information tab. versions.htm: versions.htm: versions.htm:
  • versions.htm:
  • versions.htm:
  • versions.htm:
  • versions.htm:
  • versions.htm:
  • versions.htm: versions.htm: versions.htm:2bbn). Help for Find.., versions.htm:3j3q. versions.htm:2bbn. versions.htm:1ntp: Deuterium in protein (no water in this model). versions.htm:3qba: Deuterium in DNA and water (DOD). versions.htm:7ucr: Deuterium in RNA and water (DOD). versions.htm:3fe0: Deuterium in water (DOD) only.--> versions.htm:Molecule Information Tab are improved: versions.htm: versions.htm: versions.htm:incomplete sidechains. versions.htm: versions.htm:Molecule Information Tab are improved: versions.htm:EXAMPLES versions.htm:Counting Nucleotides. versions.htm:7ucr. versions.htm:(in the Button Box), versions.htm:(in the Button Box) versions.htm:1dv4. versions.htm:More about using Find.. versions.htm:Molecule Information Tab) versions.htm:The versions.htm:asymmetric unit of 3hyd. versions.htm:Browser Tabs. versions.htm:main entrance), including the SARS-CoV-2 spike versions.htm:7ucr. versions.htm:dipeptide ligands versions.htm:1usi versions.htm:1g2v versions.htm:Spreadsheet-Ready Lists said to save versions.htm:6ucy. versions.htm:9ins. versions.htm:1igt: Antibody with glycosylated heavy chains. versions.htm:1jyn: Beta-galactosidase with bound lactose. versions.htm:7PQQ. versions.htm:1HPN. versions.htm:1D66. versions.htm:Molecule Information Tab, Model weights versions.htm:7ucr versions.htm:3eoj, 148,935 vs. 149,817. versions.htm:3eoj: versions.htm:7UCR. Find "U50". Then show Contacts versions.htm:8HFS was never displayed. versions.htm: versions.htm: versions.htm:3iyv.pdb. versions.htm:Molecule Information Tab versions.htm:3cz3, versions.htm:5i1r. versions.htm:5sop. versions.htm:Molecule Information Tab) for Ligands+ versions.htm:
  • 4FFL versions.htm:
  • 1g2v versions.htm:
  • 1usi versions.htm:ConSurf-preprocessed 4ENL. versions.htm:ConSurf-preprocessed 1flo. versions.htm:1LBG. versions.htm:1bdx. versions.htm:6hww. versions.htm:1jgo. versions.htm:1phw. versions.htm:ConSurf in Notes). versions.htm:4b14_consurf.pdb versions.htm:data1.pdb. versions.htm: versions.htm: versions.htm: versions.htm: versions.htm: versions.htm: versions.htm:2xi9. versions.htm:minimal header section versions.htm:conservation.pdb. versions.htm:conservation-noheader.pdb. versions.htm:4uft. versions.htm:simplification were designed to versions.htm:1a34 versions.htm:4uft. versions.htm:Molecule Information Tab, and then clicking versions.htm:data7.pdb, which is 3j3p.pdb renamed.) versions.htm:Molecule Information Tab) versions.htm:simplifies versions.htm: versions.htm: versions.htm:backbone atoms versions.htm:ligands+. versions.htm:somewhat more liberal simplification rules versions.htm: versions.htm:Reovirus Core 1ej6. versions.htm:1sva versions.htm: versions.htm:1sva versions.htm:Numerous examples are provided. versions.htm: versions.htm:2GTL in its biological unit 1, versions.htm:2GTL produced versions.htm:1d66, which has 2 sequence-identical protein versions.htm:new section in the Notes. It details versions.htm:uploaded to FirstGlance. versions.htm:See important instructions and examples. versions.htm:simplification. versions.htm:
  • 1abc versions.htm:
  • 2cx2 versions.htm:
  • 1vsz versions.htm:9nnd had status HPUB, and versions.htm:9nix had status HOLD. versions.htm: versions.htm:each level better than "unreliable" versions.htm:3a38 versions.htm:1b13 versions.htm:1p5x versions.htm:2ic3 versions.htm:4yh7 versions.htm:more objective descriptions, versions.htm:5d8v, and scroll down in the lower left (help) panel versions.htm:1bdx (protein and DNA). versions.htm:7mgp. versions.htm:1zw0 Biological Unit 2. versions.htm:Unit 1 of 6cnu. versions.htm:main entrance, versions.htm:Example: 1ucy. versions.htm:main entrance, click on Advanced Options. versions.htm:1ijw (link includes "&eltim=1"). versions.htm:1jpu. versions.htm:4rea. versions.htm:Examples of bond clusters. versions.htm: versions.htm: versions.htm:main entrance). versions.htm:unusual components or features versions.htm:6zx4. versions.htm:6wi2. versions.htm:2are and versions.htm:1s1a. versions.htm:7o3e. versions.htm:1ijw (click on alternate locations versions.htm:Molecule Information Tab, then scroll versions.htm:entry page versions.htm:entry page versions.htm:Molecule Information Tab, versions.htm:Introduction, versions.htm:Introduction toggle together with those in the versions.htm:Molecule Information Tab. versions.htm:Introduction, versions.htm:Molecule Information Tab. versions.htm:2xi9. versions.htm:6cty. If you toggle from fewer to more versions.htm:Simple example: 3hyd. versions.htm:
  • Molecule Information Tab: versions.htm:Example: 1ijw. versions.htm:incomplete sidechains. versions.htm:Example: 1ijw. versions.htm:(S- versions.htm:Introduction remain visible.) versions.htm:Example: 3htl. versions.htm:Example: 2xi9. versions.htm:Example: 6e87. versions.htm:Example: 4mkm. versions.htm:Example: 1v54. versions.htm:Example: 6zx4. versions.htm:Simple example: 3hyd. versions.htm:Example: 1ijw. versions.htm:Example: 1ijw. versions.htm:
  • Introduction: versions.htm: versions.htm:Molecule Information Tab, versions.htm:3HTL. versions.htm:Example: 2xi9. versions.htm:Example: 6e87. versions.htm:Example: 4mkm. versions.htm:Example: 1v54. versions.htm:Example: 6zx4. versions.htm:(example: 7dy0) versions.htm:the map data for 1d66 were not deposited in the PDB. versions.htm:Density map methods used by FirstGlance/JSmol versions.htm:Molecule Information Tab. versions.htm:3ZZZ, versions.htm:5XAA. versions.htm:Molecule Information Tab. versions.htm:
  • 5XAA has N-terminal acetylation (1 line). versions.htm:
  • 3ZZZ has an N-terminal expression tag versions.htm:
  • 4a00 has engineered mutations (3 lines). versions.htm:
  • 3odL has engineered modifications of a versions.htm:
  • 4adp versions.htm:
  • 1zeL has cloning artifacts and a conflict versions.htm:
  • 2e00 has an N-terminal expression tag versions.htm:
  • 1CGQ has insertions (3 lines). versions.htm:
  • 110L has sequence conflicts (3 lines). versions.htm:
  • 2f0w has versions.htm:
  • 2dxd referenced a non-existent REMARK 999, versions.htm:
  • 2ffi has modified residues versions.htm:
  • 6pv7 has versions.htm:1o00 (10 described), versions.htm:4j18 (described as open or closed), versions.htm:4RPZ (11 not described), versions.htm:1d0a (2 described + 5 not described), versions.htm:4b2b (287 mostly described), versions.htm:2fzv or versions.htm:4mym (1 related, not PDB), versions.htm:7nrx (1 EMDB described), versions.htm:6myx (3 PDB, 2 EMDB). versions.htm:Focus Box in the versions.htm:1v00: chirality errors even with versions.htm:
  • 1aaQ: atomic clashes. versions.htm:
  • 5uu5: improper peptide linkages. versions.htm:
  • 5a0a: "long bond". versions.htm:1num, versions.htm:4atc, versions.htm:5tkx, versions.htm:6r8d. versions.htm:Button Box has final control. versions.htm:7AHL versions.htm:4zuL versions.htm:1f8s versions.htm:1g3i versions.htm:5LEG versions.htm:5NP6 versions.htm:(Focus Box). versions.htm:(Focus Box) versions.htm:Focus Box) versions.htm:1ijw. versions.htm:1ijw. versions.htm:2bbn). The default viewer at RCSB.org versions.htm:Molecule Information Tab), versions.htm:(Molecule Information Tab), versions.htm:6byp. versions.htm:1hxw-salt-bridges.htm. versions.htm:example of such a listing versions.htm:6cnu (small), versions.htm:5e5t (larger), versions.htm:2q33 (100% of non-Gly amino acids are D). versions.htm:unusual components. versions.htm:5e5t. versions.htm:9ins. versions.htm:further information. versions.htm:6mt3 versions.htm:6mt3 versions.htm:7ahl. versions.htm:(More here, and for versions.htm:(Molecule Information Tab and Tools tab), versions.htm:1bl8. versions.htm:1f1j, illustrated at right. versions.htm:6qj4. versions.htm:6oy5 versions.htm:1d66: X-ray Diffraction Yes 0 versions.htm:•1hho: X-ray Diffraction Yes 1 versions.htm:•1b6b: X-ray Diffraction Yes 2 (monomers) versions.htm:•5cev: X-ray Diffraction Yes 2 (hexamers, neither = asymmetric unit) versions.htm:•1qrd: X-ray Diffraction Yes 2 (software determined more likely than author determined) versions.htm:•5mny: Neutron Diffraction Yes 0 versions.htm:•2yz4: Neutron Diffraction Yes 1 versions.htm:•6pkj: Electron Crystallography Yes 0 versions.htm:•6oiz: Electron Crystallography Yes 1 versions.htm:•2bbn: Solution NMR No 0† versions.htm:•5v7z: Solid State NMR ? 0 versions.htm:•2c0x: Solid State NMR ? 1 versions.htm:•6ef8: Electron Microscopy No 0 versions.htm:•6nef: Electron Microscopy Yes 1 versions.htm:4d2c, versions.htm:1dpp. versions.htm:1zms). Thanks to versions.htm:1sva (virus capsid). versions.htm:(2bbn. versions.htm:1vif, versions.htm:5u66, versions.htm:5cxt, versions.htm:3L8L, versions.htm:3Lqr, versions.htm:3m9s, versions.htm:209d, versions.htm:2iwe. versions.htm:4ffL), versions.htm: 2cyh, versions.htm: 1dpp). versions.htm:4q1L). versions.htm:3rtj versions.htm:6mdx versions.htm:4enl. versions.htm:2hhd. versions.htm:Focus Box) failed to re-display them. versions.htm:4dw5 was invisible in the initial view versions.htm:2uus), versions.htm:(e.g. 1alx), versions.htm:(e.g. 2gn2). versions.htm:3hyd and click on alternate locations versions.htm:1izh has alternate locations for the ligand. versions.htm:1bkx, versions.htm:1k28. versions.htm:6hww (biological unit) versions.htm:5x50 versions.htm:
  • 5x9z versions.htm:
  • 2ace, versions.htm:1bl8, versions.htm:5zgg. versions.htm:5yxb versions.htm:1bkx; versions.htm:2ype. versions.htm:4cpa. versions.htm:Java versions.htm:
  • At the initial page, a help link has been added: versions.htm: versions.htm: versions.htm:results of browser re-testing are summarized. versions.htm:Where? How? is linked at the bottom of every tab versions.htm:Van der Waals interactions. versions.htm:The instructions versions.htm:More.. versions.htm:FGiJ 0.991). See Jmol Bugs. versions.htm:Adoptions page. versions.htm:
  • Non-standard residues versions.htm:1EVV, versions.htm:1BKX. versions.htm: versions.htm: versions.htm:
  • A new Snapshot Gallery was versions.htm:(More..). Selection of these was made versions.htm:(More..). versions.htm:1AL4 has hydrogen on both.) versions.htm:
  • The inability of Jmol to report versions.htm:
  • Rare Anomalous atoms versions.htm:dots. versions.htm:
  • versions.htm:Known Unresolved Issues. Added a section versions.htm:Technical Information. versions.htm:A new list of Jmol Bugs and Limitations versions.htm:Preliminary CIF Observations. versions.htm:
  • Korea was added to the list of mirror versions.htm: versions.htm: versions.htm:
  • Known unresolved issues was revised, versions.htm:Several versions.htm:About FirstGlance. versions.htm:Examples. Although the backbone versions.htm:Technical Information for Developers. versions.htm: versions.htm:installation and versions.htm:PDB data file access methods. versions.htm:Added new document Known Unresolved Issues. videocapture.htm:version 4.3. videocapture.htm:built-in methods videocapture.htm:6mx4, automatically videocapture.htm:7rin. videocapture.htm:7rin videocapture.htm:2xi9 videocapture.htm:2xi9), or manually controlled whatis.htm:methods are detailed. whatis.htm:1F1J? whatis.htm:6QJ4? whatis.htm: whatis.htm:6QJ4. whatis.htm:easily hidden.) whatis.htm:8 non-technical descriptions. whatis.htm:5 grades, whatis.htm: whatis.htm:Example 2: Two Ig domains in an antibody. whatis.htm:(Detection methods.) whatis.htm:1ZMS in FirstGlance. whatis.htm:Example. whatis.htm:(Sample Listing: whatis.htm:Molecule Information Tab. whatis.htm:Snapshot. whatis.htm:glycoprotein bonds. whatis.htm:Sample Listing) whatis.htm:Examples with more details. whatis.htm: whatis.htm:( whatis.htm: whatis.htm:Molecule Information Tab for explanations, whatis.htm: whatis.htm:(1ijw. whatis.htm:Example cases. whatis.htm: whatis.htm:instructions for making a sequence alignment whatis.htm:(1lfa. where.htm:2AGT where.htm:in "more details" mode only. where.htm: where.htm:2AGT where.htm:About FirstGlance is an index to many separate help where.htm:Acknowlegements: See Copyright, Licenses, Acknowledgements. where.htm:Adoptions of FirstGlance: Journals and structural bioinformatics resources that have adopted FirstGlance in Jmol are listed at Adoptions. where.htm:All About FirstGlance is an index to many separate help where.htm:fully supported. where.htm:FirstGlance. where.htm:Additional examples. where.htm:"more details" mode only. where.htm:2AGT where.htm:In "more details" mode only, where.htm:How FirsGlance Defines Conformations, where.htm:More information. where.htm:"more details" mode where.htm:can be listed, spreadsheet-ready. where.htm:Molecule Information Tab. where.htm:"more details" mode only. where.htm:Example: Examples. where.htm:can be listed, spreadsheet-ready. where.htm:can be listed, spreadsheet-ready: where.htm:Copyright of FirstGlance: See Copyright, Licenses, Acknowledgements. where.htm:Credits: See Copyright, Licenses, Acknowledgements. where.htm:Protein Crosslinks (new in version 3.5). where.htm:in "more details" mode only. where.htm:Notes. where.htm:Simplified Mode. where.htm:"more details" mode only, where.htm:Example: details in the Notes. where.htm:can be listed, spreadsheet-ready. where.htm:Molecule Information Tab, regardless of whether covalently where.htm:Molecule Information Tab. where.htm:Examples where.htm:Molecule Information Tab). Clicking this link puts where.htm:instructions for visualization. where.htm:9bvo. where.htm:Header sections recognized by FirstGlance, where.htm:"more details" mode only, where.htm:Example: Notes. where.htm:(example: More information. where.htm:"more details" mode only, where.htm:Example: License for FirstGlance: See Copyright, Licenses, Acknowledgements. where.htm:All About FirstGlance in Jmol. where.htm:can be generated for these categories. where.htm:"more details" mode only, where.htm:Example: Main chain vs. backbone atoms. where.htm:can be displayed. where.htm:Instructions are provided for where.htm:details in the Notes. where.htm:2bbn determined by where.htm:. Non-standard residues can optionally be rendered as balls and sticks: use Advanced/Technical in the Tools tab. where.htm:Notes where.htm:"more details" mode only. where.htm:can be listed, spreadsheet-ready: where.htm:in "more details" mode only. where.htm:1SJV. where.htm:What Is FirstGlance in Jmol?, where.htm:entry page. where.htm:"more details" mode only. where.htm:entry page. where.htm:Powerpoint presentations: See Presenting Molecular Views and Animations. where.htm:Presentations: See Presenting Molecular Views and Animations. where.htm:"more details" mode only. where.htm:in "more details" mode only. where.htm:More information and examples. where.htm:instructions. where.htm:can be listed, spreadsheet-ready. where.htm:readily available. where.htm:can be viewed. where.htm:query parameters for forcing simplification where.htm:Please see more information. where.htm:Specifications: See Troubleshooting. where.htm:several types can be generated. where.htm:Technical information: See the bottom section in the Notes for FirstGlance. where.htm:in "more details" mode only. where.htm:"more details" mode only, where.htm:Example: "more details" mode only, where.htm:Example: Troubleshooting. where.htm:What Is FirstGlance in Jmol? where.htm: where.htm:How Amino Acids Are Counted, which where.htm:How Nucleotides Are Counted, which where.htm:"more details" mode only, and subject where.htm:main entrance (see snapshot at right). where.htm:at the main entrance to FirstGlance, where.htm:Version history: See Version History, or click on the version number shown below the molecule. where.htm:What Is FirstGlance in Jmol?.