Explore " notes.htm:FirstGlance in Jmol notes.htm:Save images, rocking/spinning animations notes.htm:videos of complex/manual operations. notes.htm:All notes.htm:Amphibian notes.htm:Human notes.htm:Pectate lyase B. notes.htm:7bbv and see notes.htm:Synthetic constructs. notes.htm:7rce. notes.htm:tRNA deaminase. notes.htm:8aw3. notes.htm:Hemoglobin of loggerhead notes.htm:query parameters: notes.htm:&au=1 to the end of the URL. notes.htm:Molecule Information Tab tells you how many notes.htm:Molecule Information Tab. notes.htm:Molecule Information Tab. notes.htm:&bbonly=N. All alpha carbons will be loaded notes.htm:uploading them to FirstGlance. notes.htm:uploaded notes.htm:Molecule Information Tab to get Biological notes.htm:1foe-opm.pdb). notes.htm:(example: 1r3j-opm.pdb). notes.htm:(example: 1foe-opm.pdb). notes.htm:(example: 4fix-opm.pdb.gz). notes.htm:predicted notes.htm:abcd, notes.htm: 0abc, notes.htm: 1abcd, notes.htm: 1a@b: notes.htm:

1abc Entry does not exist: notes.htm:

2cx2 WDRN, withdrawn by its depositors notes.htm:

1vsz OBS, obsolete and superseded. notes.htm:5np6 (huge), notes.htm:8rox (5-character ligand ID): notes.htm:

RoseTTaFold-W9JUFF.pdb notes.htm:RoseTTaFold-W9JUF2.pdb. notes.htm:

3j3y HIV capsid, available only in mmCIF format. notes.htm:

1ijw.cif mmCIF requested, despite notes.htm:M24L48-single-polyhedron.pdb. notes.htm:Molecule Information Tab will state that notes.htm:M24L48-single-polyhedron.pdb. notes.htm:Focus Box): notes.htm:6hww notes.htm:Unsimplified 5x50 notes.htm:

5x9z notes.htm:

2ace, notes.htm:(Focus Box) notes.htm:

Density map methods used by FirstGlance/JSmol notes.htm:1lzr notes.htm:1w08 notes.htm:4gcf notes.htm:1f8v notes.htm:1lyz notes.htm:7dy0 notes.htm:7nca notes.htm:1ucu notes.htm:Molecule Information Tab, you are offered notes.htm:Molecule Information Tab. notes.htm:Molecule Information Tab, you are offered notes.htm:Upload your renumbered PDB file to notes.htm:FirstGlance. notes.htm: notes.htm: notes.htm:1KPL AU: 4 chains (1 sequence), 1 BU: 2 chains. notes.htm:

4b14 AU: 3 chains, 3 BU 1 chain each. notes.htm:

2vxj AU: 24 chains, 24 BU all monomers. notes.htm:

2zzs AU: 32 chains, 32 BU notes.htm: 4dx9 notes.htm:

6nca AU: 60 chains, 3 sequences, notes.htm:

3m6y AU: 4 chains (1 sequence), notes.htm:

1nek AU: 4 chains, 4 sequences, notes.htm:

1zw0 AU: 8 chains (1 sequence), 15 BU: 2,2,2,2, notes.htm:

2ds7 AU: 1 chain, 1 BU: 2 chains. notes.htm:

1buu AU: 1 chain, 2 BU: 3, 3 chains, notes.htm:

7mgp AU: 1 chain, 1 BU: 6 chains. notes.htm:

1hho AU: 2 chains, 2 sequences, notes.htm:

1sva AU: 6 chains, 1 sequence, 1 BU: 360 chains notes.htm:

1ej6 AU: 5 chains, 3 sequences, notes.htm:

6nef: 1 chain, 1 BU: 9 chains (filament). notes.htm:

4uft: 2 chains, 2 sequences notes.htm:

6f2s: 22 chains, 5 sequences notes.htm:

2hhd AU: 4 chains, 1 BU: 4 chains. notes.htm:

4a53 NMR. REMARK 350 (which notes.htm:

5vln NMR. REMARK 350 is present, notes.htm:

4by9 AU: 18 chains, 5 sequences, notes.htm:

6rd4 AU: 31 chains, 18 sequences, notes.htm:

7o3e has 31 chains with 23 distinct notes.htm:

Query Parameter "bu=" notes.htm:

1zw0: &bu=5 (Biological Unit 5) notes.htm:

1hho: &bu=2 (Biological Unit 2) notes.htm:1ej6 notes.htm:3iyv. notes.htm:Reovirus Core 1ej6. notes.htm:1ej6 notes.htm:3iyv notes.htm:1aym notes.htm:2GTL notes.htm:1a34 notes.htm:6rd4 notes.htm:2hhd notes.htm:3iyv, notes.htm:an animation. notes.htm:empty baskets notes.htm:query parameters. notes.htm:query parameters. notes.htm:5x9z is a single protein chain of 2,217 amino notes.htm:6quk notes.htm:4xbf notes.htm:

4aoj notes.htm:

6cri notes.htm:

3j36 notes.htm:

1hqk notes.htm:

6hkt notes.htm:

4ioa notes.htm:query parameter &nosimp.) notes.htm:1a34 notes.htm:7o3x notes.htm:2gtl notes.htm:(query parameter &nosimp) notes.htm:1aym notes.htm:3iyv notes.htm:1ej6 notes.htm:6q5u: 2.28 million atoms. notes.htm:7vrn: 2.48 million atoms. notes.htm:1wce notes.htm:8w9p: 4.58 million atoms. notes.htm:5zvt notes.htm:1m4x notes.htm:(3iyv) notes.htm:1aym rhinovirus capsid: notes.htm:3iyv clathrin cage: notes.htm:query parameter &bbonly=N. For example, notes.htm:query parameters. notes.htm:

1hho: notes.htm:

1i8L: notes.htm:

‡ 7mgp: notes.htm:

† 3Lo3: notes.htm:

‡ 6nef: notes.htm:

‡ 4aoj: notes.htm:empty baskets. notes.htm:

‡ 2gtl: notes.htm:empty baskets. notes.htm:Enzyme 1e8f notes.htm:Oblate phage Qβ particle notes.htm:Eukaryotic vault 6bp8 notes.htm:

Bacteriophage HK97 notes.htm:Eastern Equine Encephalitis notes.htm:query parameter &bbonly=1 can be used. notes.htm:Human papilloma virus 16 capsid notes.htm: notes.htm:

1qo1 protein only (ATP synthase motor, X-ray, notes.htm:

1qzb RNA only (tRNA, EM, 9 Å) notes.htm:

1bdx protein and DNA notes.htm:

6zig protein only (bacteriophage baseplate, notes.htm:

2rcj protein only (IgM pentamer, notes.htm:

Simplified Biological Unit 1 of 3iyv notes.htm:

Asymmetric unit of 3iyv, notes.htm:

3zvs protein and ligands. notes.htm:

1a1d protein only by NMR (RNA polymerase notes.htm:

Asymmetric unit of 3j3p, notes.htm:Simplified Biological Unit 1 of 3j3p notes.htm:

1mj1, Protein and RNA notes.htm:

1LBG, Protein and DNA (lac repressor bound notes.htm:

Unsimplified 4ioa, Protein and RNA notes.htm:

486d, RNA notes.htm:2ACE notes.htm:Specifications have been developed. notes.htm:4ffL, notes.htm:4reo) notes.htm:2cyh, notes.htm:1dpp, notes.htm:8g82) notes.htm:4q1L - Find "polymerLength=3"). notes.htm:Molecule Information Tab. notes.htm:Focus Box, notes.htm:Button Box. notes.htm:Focus Box) by entering notes.htm:1D66, notes.htm:2HHD, notes.htm:1IGT, notes.htm:1APM. notes.htm:1JSA. Jmol notes.htm:(see bugs in Jmol). notes.htm:[More..] notes.htm:4CPA, notes.htm:1BKX. notes.htm:Focus Box with these terms: notes.htm:Focus Box). notes.htm:(see bugs in Jmol). This can cause notes.htm:2SOC. notes.htm:1jyn, notes.htm:1igt, notes.htm:7bbv, notes.htm:3t5o, notes.htm:6rhe, notes.htm:7wv3, EM 2.3 notes.htm:9bvo, EM 4.4 notes.htm:8xy9, X-ray 3.6 notes.htm:2kqo, NMR notes.htm:1c58, X-ray 1.0 notes.htm:148L, X-ray 1.9 notes.htm:1a0t, X-ray 2.4 notes.htm:1a78, X-ray 2.0 notes.htm:3gzt, EM 3.8 notes.htm:8y3j, EM, 3.2 notes.htm:8yvy, EM 3.0 notes.htm:5t01, X-ray 1.9 notes.htm:6bhj, X-ray 2.8 notes.htm:3agv, X-ray 2.2 notes.htm:3kle, X-ray 3.2 notes.htm:6bhj, X-ray 2.8 notes.htm:6yrb, X-ray 2.3 notes.htm:1f8b, X-ray 1.8 notes.htm:6evv, X-ray 2.5 notes.htm:176d, NMR notes.htm:1m06, X-ray 3.5 notes.htm:7LKC, X-ray 1.0 notes.htm:7dc4, X-ray 1.0 notes.htm:8g82, X-ray 1.2 notes.htm:1ao2, NMR notes.htm:2kvj, NMR notes.htm:3c1p, X-ray 1.0 notes.htm:2LSC, NMR notes.htm:1bp8, NMR notes.htm:Molecule Information Tab notes.htm:1k28 (selenomethionine) notes.htm:1bkx (phosphoserine, phosphothreonine) notes.htm:8g82 (many non-standard amino acids) notes.htm:5e5t (and see notes.htm:1evv notes.htm:Introduction notes.htm:1i9v. Find T and RNA. notes.htm:GTP in 1qln. notes.htm:6cnu (small), notes.htm:5e5t (larger), notes.htm:2q33 (100% of non-Gly amino acids are D). notes.htm:Version 3.0, FirstGlance handles D-amino acids notes.htm:as unusual components. notes.htm:5e5t. notes.htm:6n7r. notes.htm:1EVV notes.htm:1H3O, notes.htm:1BKX. notes.htm:1B07. notes.htm:1apm, notes.htm:310D. notes.htm:1apm.) notes.htm:1ucy has a standard arginine sidechain, notes.htm:1JSA. notes.htm:More.. notes.htm:Molecule Information Tab as an estimate of notes.htm:1QLN notes.htm:Unsimplified
4ioa notes.htm:Unsimplified
1fka notes.htm:Some alpha carbons only: Unsimplified 4ioa. notes.htm:All alpha carbons only: 1jgo. notes.htm:1QLN. notes.htm:1mj1. notes.htm:4bxf. notes.htm:Unsimplified 1fka: notes.htm:2soc. notes.htm:4en3. notes.htm:1uc5. notes.htm:1h3o, notes.htm:1usi. notes.htm:3hm6. notes.htm:1jgo notes.htm:6e1w notes.htm:Asymmetric
Unit of
1a34 notes.htm:DNA: 1ijw, notes.htm:1flo. notes.htm:1u6b, notes.htm:1ehz. notes.htm:104d, notes.htm:1hmh. notes.htm:6n7r. The N residues are modeled as A:U pairs in notes.htm:

6d06 has 1 unknown RNA nucleotide N11 in chain C. notes.htm:

The asymmetric unit of 7Lph notes.htm:

The 2i82 notes.htm:

The asymmetric unit of 3dzi is modeled notes.htm:1g9s, notes.htm:1phw, notes.htm:8u0z. notes.htm:

6kr6 has 1 unknown nucleic residue N5 in chain B notes.htm:

7e9e has 2 unknown RNA notes.htm:

6e1w has 2 unknown RNA nucleotides, N13-14. notes.htm:

7oqe has 53 unknown nucleic residues [N] in chain I notes.htm:

1dv4 has all 361 nucleotides modeled notes.htm:

1mj1: mixture of notes.htm:

Unsimplified 1fka: notes.htm:

6d06 has 1 unknown RNA nucleotide N11 in chain C. notes.htm:

6e1w has 2 unknown RNA nucleotides, N13-14. notes.htm:

1fyk has 8 unknown DNA nucleotides notes.htm:

7oqe has 53 unknown nucleic residues [N] in chain I notes.htm:

1dv4 has all 361 nucleotides modeled notes.htm:

6kr6 has 1 unknown nucleic residue N5 in chain B notes.htm:

6e1w has 2 unknown RNA nucleotides, N13-14. notes.htm:

The asymmetric unit of 1s47 notes.htm:

1mj1: mixture of notes.htm:

1jgo: mixture of notes.htm:(DNA in 1d66, notes.htm:1ijw, notes.htm:1flo; notes.htm:RNA in 104d, notes.htm:1u6b), notes.htm:(DNA in 1l1m, notes.htm:1QLN; notes.htm:RNA in 1evv, notes.htm:1ehz; notes.htm:1hmh notes.htm:(DNA in 1flo; notes.htm:RNA in 1u6b). notes.htm:8uci, notes.htm:7v0w. notes.htm:6nje. notes.htm:1atp, notes.htm:7v0w. notes.htm:Molecule Information Tab. notes.htm:Focus Box), enter the terms listed under notes.htm:

1BL8 notes.htm:

1APM. notes.htm:showing notes.htm:

1q29 notes.htm:

1i9v notes.htm:Molecule Information Tab. notes.htm:

The asymmetric unit of 1s47 notes.htm:Molecule Information Tab. notes.htm:

The asymmetric unit of 1a34 has U11 notes.htm:Unsimplified 1fka notes.htm:486d notes.htm:1A1D (a single protein chain), notes.htm:1BDX (four protein chains notes.htm:1LBG (four protein chains, notes.htm:Molecule Information Tab of FirstGlance, notes.htm: 7UCR) notes.htm:2bbn. notes.htm:most sugars. notes.htm: 1K28) notes.htm:1ijw. notes.htm:

5e01: notes.htm:

‡ 1fhy: notes.htm:1nek: 4 chains, 1 sequence, in its notes.htm:

1f02: notes.htm:

1pma: notes.htm:

† 7o3e: notes.htm:

† 8qbm: notes.htm:

† ‡ 7txj: notes.htm:

‡ 1f8v: notes.htm:

‡ 1m06: notes.htm:

‡ 5j37: notes.htm:

1ucy: In biological unit 1 (BU1), notes.htm:

‡ 7mgp: BU1 has notes.htm:

‡ 8y3j: BU1 has 180 copies of each of notes.htm:

notes.htm:7wv3. notes.htm:

notes.htm:

fewer details mode, which notes.htm:7UCR, notes.htm:How FirstGlance Defines Conformations). notes.htm:Molecule Information Tab or in the notes.htm:Introduction. notes.htm:1ijw, which as 2 conformations for a single notes.htm:Molecule Information Tab: notes.htm:more details mode: notes.htm:2xi9. notes.htm:in the Sample Listing with Procedure. notes.htm:Focus Box, which is in any notes.htm:tab notes.htm:1ijw, notes.htm:Molecule Information Tab. notes.htm:1ijw notes.htm:Find.. to put halos on notes.htm:1jyn, a 4-chain protein tetramer with notes.htm://Technical Information. notes.htm:1D66 notes.htm:1yjo and notes.htm:1yjp notes.htm:

In 1D66 (Gal4 bound notes.htm:

In 1BL8, the potassium notes.htm:

In 1LCD, numerous notes.htm:1D66 contact each other forming a small, buried, notes.htm:1D66. notes.htm:

The contacts to heme (HEM) in Example: Each chain in 2hhd notes.htm:1bl8, notes.htm:2xy9, notes.htm:1bl8, notes.htm:5j0z, notes.htm:6nie. notes.htm:7rin: notes.htm:Molecule Information Tab, and there, notes.htm:7ahl. notes.htm:7ahl, initially, notes.htm:2hhd, notes.htm:2v61. This example has only ~9,000 atoms, so it notes.htm:One end of peptide chain P in 2VAB contains notes.htm:

Each chain in the homotetramer 1BL8 has one cation-pi interaction notes.htm:interaction with chain A in 1B07. notes.htm:direction, between chains B and D in 1IGT. CaPTURE is unable to notes.htm:6b8t: notes.htm:Molecule Information Tab, and there, notes.htm:2HHD, or a heme group, or an notes.htm:1D66 reveals the cadmium-sulfur notes.htm:1BL8 reveals their notes.htm:1KF1 reveals their notes.htm:

1IXJ includes DNA, notes.htm:1LCD notes.htm:Focus Box. notes.htm:1nme. notes.htm:

1jpu. notes.htm:

6zx4 has notes.htm:6nef notes.htm:6ef8 notes.htm:

Isopeptides: 3mrm. notes.htm:

His-Tyr: 4rea. notes.htm:4ga9 has Cys, Lys, Cys in close proximity. notes.htm:⊳ Example: 2xi9. notes.htm:2x9x notes.htm:2x9x_redone.pdb), notes.htm:2are (Gln1) and notes.htm:1s1a (PCA1). notes.htm:Example: 2xi9. notes.htm:6ef8. notes.htm:⊳ Example: 6e87 notes.htm:6nef notes.htm:6u4s notes.htm:4kwj notes.htm:2PNL. notes.htm:Ester crosslink example: 4mkm. notes.htm:⊳ Example: 1v54. notes.htm:1gge. notes.htm:Example: 6zx4. notes.htm:

2xi9: isopeptides and thioesters. notes.htm:

2yev: thioethers and His-Tyr. notes.htm:

1nme: thioethers and Lys-Cys NOS notes.htm:9ins. notes.htm:9ins (resolution 1.7 Å), notes.htm:7s99, notes.htm:3hyd in FirstGlance. notes.htm:Show More Details notes.htm:Molecule Information Tab, click it. notes.htm:Molecule Information Tab. notes.htm:9ins (2 conformations, insulin) notes.htm:7rsa (2 conformations, RNAse) notes.htm:8paz (3 conformations, cupredoxin) notes.htm:8a3h (3 conformations, endoglucanase) notes.htm:1bsz (3 conformations, bacterial peptide deformylase) notes.htm:1dlf (3 conformations, antibody Fv) notes.htm:Asymmetric unit of 4nia. notes.htm: in 8a3h (endoglucanase). notes.htm: in 1fxo notes.htm: in 5pog notes.htm:

[USP]2101 (3 conformations) in 5qye notes.htm:

[GOL]200 (5 conformations) in 2qw7 notes.htm:Asymmetric unit of 4nia (see illustrations notes.htm:in 3dn1 notes.htm:1bxo (proteinase) has a notes.htm:Introduction, notes.htm:Molecule Information Tab, click Animate notes.htm:5sop: notes.htm:4NVK notes.htm:

1ijw (Protein & DNA. A single notes.htm:

7rin (Protein, 16% forked, notes.htm:

6b8t (Protein, 17% forked, notes.htm:

6o4f (Protein, 2% forked, notes.htm:

5sop (Protein, 50% forked, notes.htm:

5e1p (Protein, 76% forked, notes.htm:

5i1r (Peptide. When animated, notes.htm:

5qye (Protein, 5% forked, notes.htm:

3b2c (Protein, 100% forked, notes.htm:

4aoj (Protein. notes.htm:

4nia (asymmetric unit) notes.htm:

1zir (Crystallin. notes.htm:

5pog (Protein. notes.htm:

3eoj (asymmetric unit) (Bacteriochlorophyll. notes.htm:

1cm4 (Protein. 100% of the alpha carbons have 4 notes.htm:Molecule Information Tab, and then notes.htm:

3qba (DNA, 30% of phosphorus atoms forked, notes.htm:

7ucr (RNA, 8% of phosphorus atoms forked, notes.htm:

3kqu (Protein + DNA, notes.htm:

1egw (Protein + DNA. All DNA phosphorus notes.htm:

3cz3 (Protein + RNA. All RNA phosphorus notes.htm:

3cye notes.htm:

2gn2 notes.htm:

1sy7 notes.htm:

6DLQ notes.htm:Unusual Features. notes.htm:See also 5sop (illustrated below), notes.htm:and 5sp6. notes.htm:focus box): notes.htm:5sop has 3 conformations. Above, notes.htm:7rin: The ligand TRS402 has alternate locations. notes.htm:(Focus box) after the contacts are displayed. notes.htm:

6b8t: Targeting the ligand GOL302 notes.htm:

7ucr: notes.htm:Molecule Information Tab, and there, notes.htm:simplified mode (fewer details). notes.htm:Show more details checks notes.htm:Molecule Information Tab. notes.htm:4ffL, notes.htm:4reo. notes.htm:Molecule Information Tab. notes.htm:4d2c, notes.htm:1dpp. notes.htm:2soc, notes.htm:1al4. notes.htm:1evv and notes.htm:1i9v. notes.htm:1g22. notes.htm:3htl. notes.htm:2xi9. notes.htm:6e87. notes.htm:4mkm. notes.htm:1v54. notes.htm:6ZX4. notes.htm:1kp0. notes.htm:7ucr. notes.htm:1kp0 (sidechain O/N on ASX, GLX), notes.htm:5g4a (unknown atoms), notes.htm:5wbn (unknown atoms). notes.htm:3hm6 (alpha helix of unknown sequence notes.htm:in polymer chain, 2i82; notes.htm:not in polymer, asymmetric unit of 3dzi. notes.htm:6eqq, notes.htm:1h3o, notes.htm:2fd8 notes.htm:Arg 475 chain A in 6rt4 notes.htm:4en3. notes.htm:1b07; notes.htm:1uc5. notes.htm:1aha. notes.htm:1bkx; notes.htm:1fmo. notes.htm:5gyz. notes.htm:5gz5. notes.htm:5udt. notes.htm:5udt. notes.htm:6b8b. notes.htm:6bLb. notes.htm:5g4a. notes.htm:5nd4. notes.htm:5kjx. notes.htm:5c8w. notes.htm:2ype. notes.htm:1igy. notes.htm:1d5t, notes.htm:4cpa, notes.htm:1h3o. notes.htm:2xi9. notes.htm:more details mode. notes.htm:1a1d, notes.htm:1bdx. notes.htm:empty baskets notes.htm:4o46. notes.htm: notes.htm:1hc0. notes.htm:Molecule Information Tab, notes.htm:1d66. notes.htm:"empty baskets". notes.htm:Molecule Information Tab. notes.htm:Example: 2ace. notes.htm:Molecule Information Tab, in notes.htm:"more details" mode only. notes.htm:Example: 1ijw. notes.htm:1ihu. notes.htm:in "more details" mode only, notes.htm:1bsz. notes.htm:3c1p; notes.htm:1evv. notes.htm:1H3O, notes.htm:1PRC notes.htm:1B07, notes.htm:1UC5. notes.htm:

1GRH, in its original form, notes.htm:(See above for how these are now handled correctly.) notes.htm:2SOC. notes.htm:

1AL4: notes.htm:

The Version History gives numerous examples notes.htm:AlphaFold Colab and RoseTTAFold Predictions, notes.htm:Caveats notes.htm:Main Entrance to FirstGlance. notes.htm:Information about the notes.htm:Related PDB Files notes.htm:Sequence notes.htm:Sequence remarks by the authors notes.htm:Simplified/Fewer Details Mode: notes.htm:Status of a PDB code, testing, such as notes.htm:links to FirstGlance. options.htm:target="_blank">Jmol.org; and Getting PDB files options.htm:Behavior of CIF Files in FirstGlance. seqalign.htm:1d66). seqalign.htm:2hbs seqalign.htm:3gtv). seqalign.htm:FirstGlance in Jmol (FG) slides.htm:different methods described separately, \n\ slides.htm:2xi9), or manual operations that you may \n\ slides.htm: slides.htm:Examples. slides.htm:Consider downloading your slides.htm: slides.htm:Examples. versions.htm: versions.htm://examples. versions.htm:Quick-Starts, versions.htm:ligands+ versions.htm:non-standard residues, versions.htm:

Alternative URLs versions.htm:Main Entrance. versions.htm: versions.htm:Molecule Information Tab versions.htm:1f8b (snapshot at right). versions.htm:Molecule Information Tab versions.htm:9bvo. Clicking the new option opens new versions.htm:Instructions. versions.htm:extensive set of PDB IDs versions.htm: versions.htm:1igt. versions.htm:Ligands+ versions.htm:(in the Button Box) versions.htm: versions.htm:8g82. versions.htm:new instructions about how versions.htm: versions.htm:Molecule Information Tab versions.htm:22 standard amino acids are absent, versions.htm:4bwm. versions.htm:7mgp. versions.htm:1pma. versions.htm: versions.htm:7TXJ. versions.htm: versions.htm:simplified, versions.htm:5j7v versions.htm:Molecule Information Tab versions.htm:7o3x. versions.htm:new section on UNK. versions.htm:unique capabilities versions.htm: versions.htm: versions.htm:Molecule Information Tab versions.htm:

1pma: protein only, 28 chains. versions.htm:

104d: DNA/RNA hybrids, 2 chains. versions.htm:

5t01: protein + DNA, 4 chains. versions.htm:

8qbm: protein + DNA + RNA, 29 chains. versions.htm:Molecule Information Tab, versions.htm:1igt. If you'd like us to add a simplified versions.htm:Molecule Information Tab, versions.htm:Examples. versions.htm:carbohydrates versions.htm:Molecule Information Tab, versions.htm:1f8b. versions.htm:1ijw, Hide.., Residue/Group TRS203. versions.htm:Molecule Information Tab versions.htm:1igt versions.htm:more examples. versions.htm:1f8b has more chains; versions.htm:1ucy has fewer chains. versions.htm:Examples, and versions.htm:more examples. versions.htm:Molecule Information Tab, versions.htm:Instructions versions.htm:3hm6 (click Show More Details) versions.htm:6e1w versions.htm:test cases has been tabulated, and the versions.htm:2GTL, versions.htm:Molecule Information Tab with links to versions.htm:1mhw (be sure to click "show more details"). versions.htm:1f8v. versions.htm: versions.htm:1ao4. Calcium ions, also designated "CA", versions.htm:148L, versions.htm:ConSurf-processed models, versions.htm:ConSurf-processed 1CLR. versions.htm:8g82. versions.htm:9ins. versions.htm:8g82. versions.htm:8kck, versions.htm:1a81. versions.htm:8q03 versions.htm:1a34, Views Solid, Composition, versions.htm:query parameter &nosimp forces versions.htm:6hkt simplified vs. versions.htm:6hkt NOT simplified. versions.htm:3gzt) versions.htm:104d. versions.htm:8g82. versions.htm:1qo1. versions.htm:1a1d. versions.htm:4xbf. versions.htm:ConSurf processed models, versions.htm:ConSurf processed models, versions.htm: versions.htm:ConSurf processed models, versions.htm: versions.htm:9ins, Find.. cys6 and sulfur, versions.htm: versions.htm:2bbn, versions.htm:Molecule Information tab. versions.htm:8jpy versions.htm:8w0q. versions.htm: versions.htm:1igt. versions.htm:Alternate Locations versions.htm:1HXW. versions.htm:ConSurf) versions.htm:(Focus Box) versions.htm: versions.htm: versions.htm:5sop. versions.htm:Additional examples. versions.htm:5sop: versions.htm:Singletons. versions.htm:all possible conformations. versions.htm:4NVK versions.htm:How to capture videos. versions.htm:Molecule Information tab. versions.htm:5sop. versions.htm:Molecule Information tab; otherwise, versions.htm:Molecule Information tab, at the bottom of the versions.htm:Focus Box), provided that you have already versions.htm:Molecule Information tab. versions.htm: versions.htm: versions.htm:

versions.htm:

versions.htm: versions.htm: versions.htm:2bbn). Help for Find.., versions.htm:3j3q. versions.htm:2bbn. versions.htm:1ntp: Deuterium in protein (no water in this model). versions.htm:3qba: Deuterium in DNA and water (DOD). versions.htm:7ucr: Deuterium in RNA and water (DOD). versions.htm:3fe0: Deuterium in water (DOD) only.--> versions.htm:Molecule Information Tab are improved: versions.htm: versions.htm: versions.htm:incomplete sidechains. versions.htm: versions.htm:Molecule Information Tab are improved: versions.htm:EXAMPLES versions.htm:Counting Nucleotides. versions.htm:7ucr. versions.htm:(in the Button Box), versions.htm:(in the Button Box) versions.htm:1dv4. versions.htm:More about using Find.. versions.htm:Molecule Information Tab) versions.htm:The versions.htm:asymmetric unit of 3hyd. versions.htm:Browser Tabs. versions.htm:main entrance), including the SARS-CoV-2 spike versions.htm:7ucr. versions.htm:dipeptide ligands versions.htm:1usi versions.htm:1g2v versions.htm:Spreadsheet-Ready Lists said to save versions.htm:6ucy. versions.htm:9ins. versions.htm:1igt: Antibody with glycosylated heavy chains. versions.htm:1jyn: Beta-galactosidase with bound lactose. versions.htm:7PQQ. versions.htm:1HPN. versions.htm:1D66. versions.htm:Molecule Information Tab, Model weights versions.htm:7ucr versions.htm:3eoj, 148,935 vs. 149,817. versions.htm:3eoj: versions.htm:7UCR. Find "U50". Then show Contacts versions.htm:8HFS was never displayed. versions.htm: versions.htm: versions.htm:3iyv.pdb. versions.htm:Molecule Information Tab versions.htm:3cz3, versions.htm:5i1r. versions.htm:5sop. versions.htm:Molecule Information Tab) for Ligands+ versions.htm:

4FFL versions.htm:

1g2v versions.htm:

1usi versions.htm:ConSurf-preprocessed 4ENL. versions.htm:ConSurf-preprocessed 1flo. versions.htm:1LBG. versions.htm:1bdx. versions.htm:6hww. versions.htm:1jgo. versions.htm:1phw. versions.htm:ConSurf in Notes). versions.htm:4b14_consurf.pdb versions.htm:data1.pdb. versions.htm: versions.htm: versions.htm: versions.htm: versions.htm: versions.htm: versions.htm:2xi9. versions.htm:minimal header section versions.htm:conservation.pdb. versions.htm:conservation-noheader.pdb. versions.htm:4uft. versions.htm:simplification were designed to versions.htm:1a34 versions.htm:4uft. versions.htm:Molecule Information Tab, and then clicking versions.htm:data7.pdb, which is 3j3p.pdb renamed.) versions.htm:Molecule Information Tab) versions.htm:simplifies versions.htm: versions.htm: versions.htm:backbone atoms versions.htm:ligands+. versions.htm:somewhat more liberal simplification rules versions.htm: versions.htm:Reovirus Core 1ej6. versions.htm:1sva versions.htm: versions.htm:1sva versions.htm:Numerous examples are provided. versions.htm: versions.htm:2GTL in its biological unit 1, versions.htm:2GTL produced versions.htm:1d66, which has 2 sequence-identical protein versions.htm:new section in the Notes. It details versions.htm:uploaded to FirstGlance. versions.htm:See important instructions and examples. versions.htm:simplification. versions.htm:

1abc versions.htm:

2cx2 versions.htm:

1vsz versions.htm:9nnd had status HPUB, and versions.htm:9nix had status HOLD. versions.htm: versions.htm:each level better than "unreliable" versions.htm:3a38 versions.htm:1b13 versions.htm:1p5x versions.htm:2ic3 versions.htm:4yh7 versions.htm:more objective descriptions, versions.htm:5d8v, and scroll down in the lower left (help) panel versions.htm:1bdx (protein and DNA). versions.htm:7mgp. versions.htm:1zw0 Biological Unit 2. versions.htm:Unit 1 of 6cnu. versions.htm:main entrance, versions.htm:Example: 1ucy. versions.htm:main entrance, click on Advanced Options. versions.htm:1ijw (link includes "&eltim=1"). versions.htm:1jpu. versions.htm:4rea. versions.htm:Examples of bond clusters. versions.htm: versions.htm: versions.htm:main entrance). versions.htm:unusual components or features versions.htm:6zx4. versions.htm:6wi2. versions.htm:2are and versions.htm:1s1a. versions.htm:7o3e. versions.htm:1ijw (click on alternate locations versions.htm:Molecule Information Tab, then scroll versions.htm:entry page versions.htm:entry page versions.htm:Molecule Information Tab, versions.htm:Introduction, versions.htm:Introduction toggle together with those in the versions.htm:Molecule Information Tab. versions.htm:Introduction, versions.htm:Molecule Information Tab. versions.htm:2xi9. versions.htm:6cty. If you toggle from fewer to more versions.htm:Simple example: 3hyd. versions.htm:

Molecule Information Tab: versions.htm:Example: 1ijw. versions.htm:incomplete sidechains. versions.htm:Example: 1ijw. versions.htm:(S- versions.htm:Introduction remain visible.) versions.htm:Example: 3htl. versions.htm:Example: 2xi9. versions.htm:Example: 6e87. versions.htm:Example: 4mkm. versions.htm:Example: 1v54. versions.htm:Example: 6zx4. versions.htm:Simple example: 3hyd. versions.htm:Example: 1ijw. versions.htm:Example: 1ijw. versions.htm:

Introduction: versions.htm:Molecule Information Tab, versions.htm:3HTL. versions.htm:Example: 2xi9. versions.htm:Example: 6e87. versions.htm:Example: 4mkm. versions.htm:Example: 1v54. versions.htm:Example: 6zx4. versions.htm:(example: 7dy0) versions.htm:the map data for 1d66 were not deposited in the PDB. versions.htm:Density map methods used by FirstGlance/JSmol versions.htm:Molecule Information Tab. versions.htm:3ZZZ, versions.htm:5XAA. versions.htm:Molecule Information Tab. versions.htm:

5XAA has N-terminal acetylation (1 line). versions.htm:

3ZZZ has an N-terminal expression tag versions.htm:

4a00 has engineered mutations (3 lines). versions.htm:

3odL has engineered modifications of a versions.htm:

4adp versions.htm:

1zeL has cloning artifacts and a conflict versions.htm:

2e00 has an N-terminal expression tag versions.htm:

1CGQ has insertions (3 lines). versions.htm:

110L has sequence conflicts (3 lines). versions.htm:

2f0w has versions.htm:

2dxd referenced a non-existent REMARK 999, versions.htm:

2ffi has modified residues versions.htm:

6pv7 has versions.htm:1o00 (10 described), versions.htm:4j18 (described as open or closed), versions.htm:4RPZ (11 not described), versions.htm:1d0a (2 described + 5 not described), versions.htm:4b2b (287 mostly described), versions.htm:2fzv or versions.htm:4mym (1 related, not PDB), versions.htm:7nrx (1 EMDB described), versions.htm:6myx (3 PDB, 2 EMDB). versions.htm:Focus Box in the versions.htm:1v00: chirality errors even with versions.htm:

1aaQ: atomic clashes. versions.htm:

5uu5: improper peptide linkages. versions.htm:

5a0a: "long bond". versions.htm:1num, versions.htm:4atc, versions.htm:5tkx, versions.htm:6r8d. versions.htm:Button Box has final control. versions.htm:7AHL versions.htm:4zuL versions.htm:1f8s versions.htm:1g3i versions.htm:5LEG versions.htm:5NP6 versions.htm:(Focus Box). versions.htm:(Focus Box) versions.htm:Focus Box) versions.htm:1ijw. versions.htm:1ijw. versions.htm:2bbn). The default viewer at RCSB.org versions.htm:Molecule Information Tab), versions.htm:(Molecule Information Tab), versions.htm:6byp. versions.htm:1hxw-salt-bridges.htm. versions.htm:example of such a listing versions.htm:6cnu (small), versions.htm:5e5t (larger), versions.htm:2q33 (100% of non-Gly amino acids are D). versions.htm:unusual components. versions.htm:5e5t. versions.htm:9ins. versions.htm:further information. versions.htm:6mt3 versions.htm:6mt3 versions.htm:7ahl. versions.htm:(More here, and for versions.htm:(Molecule Information Tab and Tools tab), versions.htm:1bl8. versions.htm:1f1j, illustrated at right. versions.htm:6qj4. versions.htm:6oy5 versions.htm:1d66: X-ray Diffraction Yes 0 versions.htm:•1hho: X-ray Diffraction Yes 1 versions.htm:•1b6b: X-ray Diffraction Yes 2 (monomers) versions.htm:•5cev: X-ray Diffraction Yes 2 (hexamers, neither = asymmetric unit) versions.htm:•1qrd: X-ray Diffraction Yes 2 (software determined more likely than author determined) versions.htm:•5mny: Neutron Diffraction Yes 0 versions.htm:•2yz4: Neutron Diffraction Yes 1 versions.htm:•6pkj: Electron Crystallography Yes 0 versions.htm:•6oiz: Electron Crystallography Yes 1 versions.htm:•2bbn: Solution NMR No 0† versions.htm:•5v7z: Solid State NMR ? 0 versions.htm:•2c0x: Solid State NMR ? 1 versions.htm:•6ef8: Electron Microscopy No 0 versions.htm:•6nef: Electron Microscopy Yes 1 versions.htm:4d2c, versions.htm:1dpp. versions.htm:1zms). Thanks to versions.htm:1sva (virus capsid). versions.htm:(2bbn. versions.htm:1vif, versions.htm:5u66, versions.htm:5cxt, versions.htm:3L8L, versions.htm:3Lqr, versions.htm:3m9s, versions.htm:209d, versions.htm:2iwe. versions.htm:4ffL), versions.htm: 2cyh, versions.htm: 1dpp). versions.htm:4q1L). versions.htm:3rtj versions.htm:6mdx versions.htm:4enl. versions.htm:2hhd. versions.htm:Focus Box) failed to re-display them. versions.htm:4dw5 was invisible in the initial view versions.htm:2uus), versions.htm:(e.g. 1alx), versions.htm:(e.g. 2gn2). versions.htm:3hyd and click on alternate locations versions.htm:1izh has alternate locations for the ligand. versions.htm:1bkx, versions.htm:1k28. versions.htm:6hww (biological unit) versions.htm:5x50 versions.htm:

5x9z versions.htm:

2ace, versions.htm:1bl8, versions.htm:5zgg. versions.htm:5yxb versions.htm:1bkx; versions.htm:2ype. versions.htm:4cpa. versions.htm:Java versions.htm:

At the initial page, a help link has been added: versions.htm: versions.htm: versions.htm:results of browser re-testing are summarized. versions.htm:Where? How? is linked at the bottom of every tab versions.htm:Van der Waals interactions. versions.htm:The instructions versions.htm:More.. versions.htm:FGiJ 0.991). See Jmol Bugs. versions.htm:Adoptions page. versions.htm:

Non-standard residues versions.htm:1EVV, versions.htm:1BKX. versions.htm: versions.htm: versions.htm:

A new Snapshot Gallery was versions.htm:(More..). Selection of these was made versions.htm:(More..). versions.htm:1AL4 has hydrogen on both.) versions.htm:

The inability of Jmol to report versions.htm:

Rare Anomalous atoms versions.htm:dots. versions.htm:

versions.htm:Known Unresolved Issues. Added a section versions.htm:Technical Information. versions.htm:A new list of Jmol Bugs and Limitations versions.htm:Preliminary CIF Observations. versions.htm:

Korea was added to the list of mirror versions.htm: versions.htm: versions.htm:

Known unresolved issues was revised, versions.htm:Several versions.htm:About FirstGlance. versions.htm:Examples. Although the backbone versions.htm:Technical Information for Developers. versions.htm: versions.htm:installation and versions.htm:PDB data file access methods. versions.htm:Added new document Known Unresolved Issues. videocapture.htm:version 4.3. videocapture.htm:built-in methods videocapture.htm:6mx4, automatically videocapture.htm:7rin. videocapture.htm:7rin videocapture.htm:2xi9 videocapture.htm:2xi9), or manually controlled whatis.htm:methods are detailed. whatis.htm:1F1J? whatis.htm:6QJ4? whatis.htm: whatis.htm:6QJ4. whatis.htm:easily hidden.) whatis.htm:8 non-technical descriptions. whatis.htm:5 grades, whatis.htm: whatis.htm:Example 2: Two Ig domains in an antibody. whatis.htm:(Detection methods.) whatis.htm:1ZMS in FirstGlance. whatis.htm:Example. whatis.htm:(Sample Listing: whatis.htm:Molecule Information Tab. whatis.htm:Snapshot. whatis.htm:glycoprotein bonds. whatis.htm:Sample Listing) whatis.htm:Examples with more details. whatis.htm: whatis.htm:( whatis.htm: whatis.htm:Molecule Information Tab for explanations, whatis.htm: whatis.htm:(1ijw. whatis.htm:Example cases. whatis.htm: whatis.htm:instructions for making a sequence alignment whatis.htm:(1lfa. where.htm:2AGT where.htm:in "more details" mode only. where.htm: where.htm:2AGT where.htm:About FirstGlance is an index to many separate help where.htm:Acknowlegements: See Copyright, Licenses, Acknowledgements. where.htm:Adoptions of FirstGlance: Journals and structural bioinformatics resources that have adopted FirstGlance in Jmol are listed at Adoptions. where.htm:All About FirstGlance is an index to many separate help where.htm:fully supported. where.htm:FirstGlance. where.htm:Additional examples. where.htm:"more details" mode only. where.htm:2AGT where.htm:In "more details" mode only, where.htm:How FirsGlance Defines Conformations, where.htm:More information. where.htm:"more details" mode where.htm:can be listed, spreadsheet-ready. where.htm:Molecule Information Tab. where.htm:"more details" mode only. where.htm:Example: Examples. where.htm:can be listed, spreadsheet-ready. where.htm:can be listed, spreadsheet-ready: where.htm:Copyright of FirstGlance: See Copyright, Licenses, Acknowledgements. where.htm:Credits: See Copyright, Licenses, Acknowledgements. where.htm:Protein Crosslinks (new in version 3.5). where.htm:in "more details" mode only. where.htm:Notes. where.htm:Simplified Mode. where.htm:"more details" mode only, where.htm:Example: details in the Notes. where.htm:can be listed, spreadsheet-ready. where.htm:Molecule Information Tab, regardless of whether covalently where.htm:Molecule Information Tab. where.htm:Examples where.htm:Molecule Information Tab). Clicking this link puts where.htm:instructions for visualization. where.htm:9bvo. where.htm:Header sections recognized by FirstGlance, where.htm:"more details" mode only, where.htm:Example: Notes. where.htm:(example: More information. where.htm:"more details" mode only, where.htm:Example: License for FirstGlance: See Copyright, Licenses, Acknowledgements. where.htm:All About FirstGlance in Jmol. where.htm:can be generated for these categories. where.htm:"more details" mode only, where.htm:Example: Main chain vs. backbone atoms. where.htm:can be displayed. where.htm:Instructions are provided for where.htm:details in the Notes. where.htm:2bbn determined by where.htm:. Non-standard residues can optionally be rendered as balls and sticks: use Advanced/Technical in the Tools tab. where.htm:Notes where.htm:"more details" mode only. where.htm:can be listed, spreadsheet-ready: where.htm:in "more details" mode only. where.htm:1SJV. where.htm:What Is FirstGlance in Jmol?, where.htm:entry page. where.htm:"more details" mode only. where.htm:entry page. where.htm:Powerpoint presentations: See Presenting Molecular Views and Animations. where.htm:Presentations: See Presenting Molecular Views and Animations. where.htm:"more details" mode only. where.htm:in "more details" mode only. where.htm:More information and examples. where.htm:instructions. where.htm:can be listed, spreadsheet-ready. where.htm:readily available. where.htm:can be viewed. where.htm:query parameters for forcing simplification where.htm:Please see more information. where.htm:Specifications: See Troubleshooting. where.htm:several types can be generated. where.htm:Technical information: See the bottom section in the Notes for FirstGlance. where.htm:in "more details" mode only. where.htm:"more details" mode only, where.htm:Example: "more details" mode only, where.htm:Example: Troubleshooting. where.htm:What Is FirstGlance in Jmol? where.htm: where.htm:How Amino Acids Are Counted, which where.htm:How Nucleotides Are Counted, which where.htm:"more details" mode only, and subject where.htm:main entrance (see snapshot at right). where.htm:at the main entrance to FirstGlance, where.htm:Version history: See Version History, or click on the version number shown below the molecule. where.htm:What Is FirstGlance in Jmol?.