A B C D E F G H I J L M N O P Q R S T U V W X Y Z

I

id - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.Peptide

chain id, due to PDB file

imageType - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.Surface

index - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.Peptide

internal enumerator of aacids, also length of the peptide chain

init(GLDrawable) - Method in class pl.krakow.cmuj.bioinformatics.jellipse.PlotRenderer

Initialize OpenGL scene.

init(GLDrawable) - Method in class pl.krakow.cmuj.bioinformatics.jellipse.StructureRenderer

Initialize OpenGL scene.

initComponents() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.About

initComponents() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.ChainChooser

initComponents() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

This method is called from within the constructor to initialize the form.

initComponents() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.PdbFetcher

This method is called from within the constructor to initialize the form.

initComponents() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.Quickinfo

This method is called from within the constructor to initialize the form.

initComponents() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.References

This method is called from within the constructor to initialize the form.

interrupt() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.SwingWorker

A new method that interrupts the worker thread.

isAcidic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Alanine

isAcidic() - Method in interface pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.AminoacidProperties

isAcidic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Arginine

isAcidic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Asparagine

isAcidic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Aspartate

isAcidic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Cysteine

isAcidic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Glutamate

isAcidic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Glutamine

isAcidic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Glycine

isAcidic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Histidine

isAcidic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Isoleucine

isAcidic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Leucine

isAcidic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Lysine

isAcidic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Methionine

isAcidic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Phenylalanine

isAcidic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Proline

isAcidic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Serine

isAcidic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Threonine

isAcidic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Tryptophan

isAcidic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Tyrosine

isAcidic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Valine

isAliphatic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Alanine

isAliphatic() - Method in interface pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.AminoacidProperties

isAliphatic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Arginine

isAliphatic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Asparagine

isAliphatic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Aspartate

isAliphatic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Cysteine

isAliphatic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Glutamate

isAliphatic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Glutamine

isAliphatic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Glycine

isAliphatic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Histidine

isAliphatic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Isoleucine

isAliphatic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Leucine

isAliphatic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Lysine

isAliphatic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Methionine

isAliphatic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Phenylalanine

isAliphatic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Proline

isAliphatic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Serine

isAliphatic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Threonine

isAliphatic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Tryptophan

isAliphatic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Tyrosine

isAliphatic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Valine

isAromatic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Alanine

isAromatic() - Method in interface pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.AminoacidProperties

isAromatic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Arginine

isAromatic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Asparagine

isAromatic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Aspartate

isAromatic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Cysteine

isAromatic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Glutamate

isAromatic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Glutamine

isAromatic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Glycine

isAromatic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Histidine

isAromatic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Isoleucine

isAromatic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Leucine

isAromatic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Lysine

isAromatic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Methionine

isAromatic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Phenylalanine

isAromatic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Proline

isAromatic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Serine

isAromatic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Threonine

isAromatic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Tryptophan

isAromatic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Tyrosine

isAromatic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Valine

isBasic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Alanine

isBasic() - Method in interface pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.AminoacidProperties

isBasic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Arginine

isBasic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Asparagine

isBasic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Aspartate

isBasic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Cysteine

isBasic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Glutamate

isBasic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Glutamine

isBasic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Glycine

isBasic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Histidine

isBasic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Isoleucine

isBasic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Leucine

isBasic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Lysine

isBasic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Methionine

isBasic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Phenylalanine

isBasic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Proline

isBasic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Serine

isBasic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Threonine

isBasic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Tryptophan

isBasic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Tyrosine

isBasic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Valine

isBuried() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Alanine

isBuried() - Method in interface pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.AminoacidProperties

isBuried() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Arginine

isBuried() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Asparagine

isBuried() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Aspartate

isBuried() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Cysteine

isBuried() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Glutamate

isBuried() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Glutamine

isBuried() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Glycine

isBuried() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Histidine

isBuried() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Isoleucine

isBuried() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Leucine

isBuried() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Lysine

isBuried() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Methionine

isBuried() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Phenylalanine

isBuried() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Proline

isBuried() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Serine

isBuried() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Threonine

isBuried() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Tryptophan

isBuried() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Tyrosine

isBuried() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Valine

isCorrect(float) - Method in class pl.krakow.cmuj.bioinformatics.jellipse.AbsDeviation

isCorrect(float) - Method in class pl.krakow.cmuj.bioinformatics.jellipse.AvgDihedralAngle

isCorrect(float) - Method in class pl.krakow.cmuj.bioinformatics.jellipse.Deviation

isCorrect(float) - Method in class pl.krakow.cmuj.bioinformatics.jellipse.LnCurvature

isCorrect(float) - Method in interface pl.krakow.cmuj.bioinformatics.jellipse.Plottable

isCyclic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Alanine

isCyclic() - Method in interface pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.AminoacidProperties

isCyclic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Arginine

isCyclic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Asparagine

isCyclic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Aspartate

isCyclic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Cysteine

isCyclic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Glutamate

isCyclic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Glutamine

isCyclic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Glycine

isCyclic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Histidine

isCyclic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Isoleucine

isCyclic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Leucine

isCyclic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Lysine

isCyclic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Methionine

isCyclic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Phenylalanine

isCyclic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Proline

isCyclic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Serine

isCyclic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Threonine

isCyclic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Tryptophan

isCyclic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Tyrosine

isCyclic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Valine

isExtensionListInDescription() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.FFilter

Returns whether the extension list (.pdb, .mmCIF, etc) should show up in the human readable description.

isHydrophobic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Alanine

isHydrophobic() - Method in interface pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.AminoacidProperties

isHydrophobic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Arginine

isHydrophobic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Asparagine

isHydrophobic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Aspartate

isHydrophobic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Cysteine

isHydrophobic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Glutamate

isHydrophobic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Glutamine

isHydrophobic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Glycine

isHydrophobic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Histidine

isHydrophobic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Isoleucine

isHydrophobic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Leucine

isHydrophobic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Lysine

isHydrophobic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Methionine

isHydrophobic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Phenylalanine

isHydrophobic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Proline

isHydrophobic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Serine

isHydrophobic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Threonine

isHydrophobic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Tryptophan

isHydrophobic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Tyrosine

isHydrophobic() - Method in class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Valine

Isoleucine - Class in pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids

An isoleucine molecule.

Isoleucine(String, Map) - Constructor for class pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Isoleucine

Creates a new instance of the Isoleucine aminoacid.